Analysis of interatomic Contacts of Structural Units in PDB entry:
8PF5

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8PF5 entry

There are 4 chains in PDB entry 8PF5 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 2	ASP 493
B	SER -1	PRO 488
C	MET 1	PRO 488
D	GLY -2	PRO 488

There are 68 helices in PDB entry 8PF5. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	13	28	Right-handed alpha
Helix 2	AA2	A	50	56	Right-handed alpha
Helix 3	AA3	A	56	77	Right-handed alpha
Helix 4	AA4	A	84	88	Right-handed 310
Helix 5	AA5	A	91	116	Right-handed alpha
Helix 6	AA6	A	171	175	Right-handed 310
Helix 7	AA7	A	177	182	Right-handed alpha
Helix 8	AA8	A	197	211	Right-handed alpha
Helix 9	AA9	A	231	245	Right-handed alpha
Helix 10	AB1	A	326	330	Right-handed 310
Helix 11	AB2	A	334	351	Right-handed alpha
Helix 12	AB3	A	378	384	Right-handed alpha
Helix 13	AB4	A	398	405	Right-handed alpha
Helix 14	AB5	A	433	446	Right-handed alpha
Helix 15	AB6	A	450	456	Right-handed alpha
Helix 16	AB7	A	464	470	Right-handed 310
Helix 17	AB8	B	13	28	Right-handed alpha
Helix 18	AB9	B	49	56	Right-handed alpha
Helix 19	AC1	B	56	77	Right-handed alpha
Helix 20	AC2	B	84	88	Right-handed 310
Helix 21	AC3	B	91	117	Right-handed alpha
Helix 22	AC4	B	171	175	Right-handed 310
Helix 23	AC5	B	177	182	Right-handed alpha
Helix 24	AC6	B	197	211	Right-handed alpha
Helix 25	AC7	B	231	245	Right-handed alpha
Helix 26	AC8	B	291	299	Right-handed 310
Helix 27	AC9	B	326	330	Right-handed 310
Helix 28	AD1	B	334	350	Right-handed alpha
Helix 29	AD2	B	378	384	Right-handed alpha
Helix 30	AD3	B	398	405	Right-handed alpha
Helix 31	AD4	B	433	447	Right-handed alpha
Helix 32	AD5	B	450	457	Right-handed alpha
Helix 33	AD6	B	464	470	Right-handed 310
Helix 34	AD7	C	13	26	Right-handed alpha
Helix 35	AD8	C	50	56	Right-handed alpha
Helix 36	AD9	C	56	77	Right-handed alpha
Helix 37	AE1	C	84	88	Right-handed 310
Helix 38	AE2	C	91	116	Right-handed alpha
Helix 39	AE3	C	171	175	Right-handed 310
Helix 40	AE4	C	177	182	Right-handed alpha
Helix 41	AE5	C	197	211	Right-handed alpha
Helix 42	AE6	C	231	245	Right-handed alpha
Helix 43	AE7	C	291	295	Right-handed 310
Helix 44	AE8	C	326	330	Right-handed 310
Helix 45	AE9	C	334	352	Right-handed alpha
Helix 46	AF1	C	378	383	Right-handed alpha
Helix 47	AF2	C	399	405	Right-handed alpha
Helix 48	AF3	C	433	447	Right-handed alpha
Helix 49	AF4	C	450	456	Right-handed alpha
Helix 50	AF5	C	464	471	Right-handed 310
Helix 51	AF6	D	13	26	Right-handed alpha
Helix 52	AF7	D	49	56	Right-handed alpha
Helix 53	AF8	D	56	76	Right-handed alpha
Helix 54	AF9	D	77	79	Right-handed 310
Helix 55	AG1	D	84	88	Right-handed 310
Helix 56	AG2	D	91	117	Right-handed alpha
Helix 57	AG3	D	171	175	Right-handed 310
Helix 58	AG4	D	177	182	Right-handed alpha
Helix 59	AG5	D	197	211	Right-handed alpha
Helix 60	AG6	D	231	245	Right-handed alpha
Helix 61	AG7	D	295	299	Right-handed 310
Helix 62	AG8	D	326	330	Right-handed 310
Helix 63	AG9	D	334	350	Right-handed alpha
Helix 64	AH1	D	378	383	Right-handed alpha
Helix 65	AH2	D	398	405	Right-handed alpha
Helix 66	AH3	D	433	447	Right-handed alpha
Helix 67	AH4	D	450	456	Right-handed alpha
Helix 68	AH5	D	464	470	Right-handed 310

There are 28 sheets in PDB entry 8PF5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	120	124	first strand
Strand 2	A	31	35	parallel
Strand 3	A	3	10	parallel
Strand 4	A	147	158	parallel
Strand 5	A	134	138	anti-parallel
Strand 6	A	126	131	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	120	124	first strand
Strand 2	A	31	35	parallel
Strand 3	A	3	10	parallel
Strand 4	A	147	158	parallel
Strand 5	A	322	324	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	81	82	first strand
Strand 2	B	89	90	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	89	90	first strand
Strand 2	B	81	82	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	162	164	first strand
Strand 2	A	287	289	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	248	251	first strand
Strand 2	A	216	221	parallel
Strand 3	A	190	194	parallel
Strand 4	A	280	283	parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	255	260	first strand
Strand 2	A	266	270	anti-parallel
Strand 3	A	275	278	anti-parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	363	366	first strand
Strand 2	A	372	376	anti-parallel
Strand 3	A	424	430	anti-parallel
Strand 4	A	411	418	anti-parallel
Strand 5	A	388	396	anti-parallel
Strand 6	A	476	479	anti-parallel
Strand 7	A	482	484	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	120	124	first strand
Strand 2	B	31	35	parallel
Strand 3	B	3	10	parallel
Strand 4	B	147	158	parallel
Strand 5	B	134	138	anti-parallel
Strand 6	B	126	131	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	120	124	first strand
Strand 2	B	31	35	parallel
Strand 3	B	3	10	parallel
Strand 4	B	147	158	parallel
Strand 5	B	322	324	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	162	164	first strand
Strand 2	B	287	289	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	247	251	first strand
Strand 2	B	216	221	parallel
Strand 3	B	190	194	parallel
Strand 4	B	280	283	parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	255	260	first strand
Strand 2	B	266	270	anti-parallel
Strand 3	B	275	278	anti-parallel

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There are 7 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	363	366	first strand
Strand 2	B	372	376	anti-parallel
Strand 3	B	424	430	anti-parallel
Strand 4	B	411	418	anti-parallel
Strand 5	B	388	396	anti-parallel
Strand 6	B	476	479	anti-parallel
Strand 7	B	482	484	anti-parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	120	124	first strand
Strand 2	C	31	35	parallel
Strand 3	C	4	10	parallel
Strand 4	C	147	158	parallel
Strand 5	C	134	138	anti-parallel
Strand 6	C	126	131	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	120	124	first strand
Strand 2	C	31	35	parallel
Strand 3	C	4	10	parallel
Strand 4	C	147	158	parallel
Strand 5	C	322	324	parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	81	82	first strand
Strand 2	D	89	90	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	89	90	first strand
Strand 2	D	81	82	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	162	164	first strand
Strand 2	C	287	289	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	248	251	first strand
Strand 2	C	216	221	parallel
Strand 3	C	190	194	parallel
Strand 4	C	280	283	parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	255	260	first strand
Strand 2	C	266	270	anti-parallel
Strand 3	C	275	278	anti-parallel

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There are 7 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	363	366	first strand
Strand 2	C	372	376	anti-parallel
Strand 3	C	424	430	anti-parallel
Strand 4	C	411	418	anti-parallel
Strand 5	C	388	396	anti-parallel
Strand 6	C	476	479	anti-parallel
Strand 7	C	482	484	anti-parallel

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There are 6 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	120	124	first strand
Strand 2	D	31	35	parallel
Strand 3	D	4	10	parallel
Strand 4	D	147	158	parallel
Strand 5	D	134	138	anti-parallel
Strand 6	D	126	131	anti-parallel

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There are 5 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	120	124	first strand
Strand 2	D	31	35	parallel
Strand 3	D	4	10	parallel
Strand 4	D	147	158	parallel
Strand 5	D	322	324	parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	162	164	first strand
Strand 2	D	287	289	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	247	251	first strand
Strand 2	D	216	221	parallel
Strand 3	D	190	194	parallel
Strand 4	D	280	283	parallel

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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	255	260	first strand
Strand 2	D	266	270	anti-parallel
Strand 3	D	275	278	anti-parallel

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There are 7 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	364	366	first strand
Strand 2	D	372	376	anti-parallel
Strand 3	D	424	430	anti-parallel
Strand 4	D	411	418	anti-parallel
Strand 5	D	388	396	anti-parallel
Strand 6	D	476	479	anti-parallel
Strand 7	D	482	484	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8PF5

Analysis of interatomic Contacts of Structural Units in PDB entry:
8PF5