Analysis of interatomic Contacts of Structural Units in PDB entry:
8PFH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8PFH entry

There are 3 chains in PDB entry 8PFH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PHE 31ASN 306
B
 GLY 98LEU 409
C
 PRO 12ASP 98
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 38 helices in PDB entry 8PFH. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
44 54Right-handed alpha
Helix 2
AA2
A
111 130Right-handed alpha
Helix 3
AA3
A
158 169Right-handed alpha
Helix 4
AA4
A
180 184Right-handed 310
Helix 5
AA5
A
185 204Right-handed alpha
Helix 6
AA6
A
216 230Right-handed alpha
Helix 7
AA7
A
267 277Right-handed alpha
Helix 8
AA8
A
279 290Right-handed alpha
Helix 9
AA9
A
290 306Right-handed alpha
Helix 10
AB1
B
104 117Right-handed alpha
Helix 11
AB2
B
133 140Right-handed alpha
Helix 12
AB3
B
215 238Right-handed alpha
Helix 13
AB4
B
265 276Right-handed alpha
Helix 14
AB5
B
292 310Right-handed alpha
Helix 15
AB6
B
324 337Right-handed alpha
Helix 16
AB7
B
376 385Right-handed alpha
Helix 17
AB8
B
388 399Right-handed alpha
Helix 18
AB9
B
399 409Right-handed alpha
Helix 19
AC1
C
15 18Right-handed 310
Helix 20
AC2
C
19 32Right-handed alpha
Helix 21
AC3
C
46 55Right-handed alpha
Helix 22
AC4
C
112 131Right-handed alpha
Helix 23
AC5
C
158 169Right-handed alpha
Helix 24
AC6
C
185 203Right-handed alpha
Helix 25
AC7
C
227 239Right-handed alpha
Helix 26
AC8
C
279 288Right-handed alpha
Helix 27
AC9
C
291 302Right-handed alpha
Helix 28
AD1
C
302 312Right-handed alpha
Helix 29
AD2
D
35 45Right-handed alpha
Helix 30
AD3
D
93 97Right-handed 310
Helix 31
AD4
D
145 168Right-handed alpha
Helix 32
AD5
D
196 210Right-handed alpha
Helix 33
AD6
D
219 222Right-handed 310
Helix 34
AD7
D
223 242Right-handed alpha
Helix 35
AD8
D
256 270Right-handed alpha
Helix 36
AD9
D
304 314Right-handed alpha
Helix 37
AE1
D
316 327Right-handed alpha
Helix 38
AE2
D
327 339Right-handed alpha
Back to top of page

There are 7 sheets in PDB entry 8PFH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
78 84first strand
Strand 2
A
91 97anti-parallel
Strand 3
A
32 38parallel
Strand 4
A
145 150parallel
Strand 5
A
177 178parallel
Strand 6
A
232 233parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
183 193first strand
Strand 2
B
196 206anti-parallel
Strand 3
B
118 125parallel
Strand 4
B
252 257parallel
Strand 5
B
284 285parallel
Strand 6
B
340 341parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
348 350first strand
Strand 2
B
356 361anti-parallel
Strand 3
B
366 368anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
79 86first strand
Strand 2
C
91 98anti-parallel
Strand 3
C
33 40parallel
Strand 4
C
145 150parallel
Strand 5
C
174 178parallel
Strand 6
C
243 244parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
251 253first strand
Strand 2
C
259 264anti-parallel
Strand 3
C
269 271anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
72 80first strand
Strand 2
D
103 112anti-parallel
Strand 3
D
129 137anti-parallel
Strand 4
D
23 29parallel
Strand 5
D
183 188parallel
Strand 6
D
211 217parallel
Strand 7
D
272 274parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
287 289first strand
Strand 2
D
294 296anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il