Analysis of interatomic Contacts of Structural Units in PDB entry:
8PFP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8PFP entry

There is 1 chain in PDB entry 8PFP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 525ASP 944
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 8PFP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
533 545Right-handed alpha
Helix 2
AA2
A
550 563Right-handed alpha
Helix 3
AA3
A
578 589Right-handed alpha
Helix 4
AA4
A
598 612Right-handed alpha
Helix 5
AA5
A
625 633Right-handed alpha
Helix 6
AA6
A
642 649Right-handed alpha
Helix 7
AA7
A
649 660Right-handed alpha
Helix 8
AA8
A
670 673Right-handed 310
Helix 9
AA9
A
679 685Right-handed alpha
Helix 10
AB1
A
686 688Right-handed 310
Helix 11
AB2
A
689 694Right-handed alpha
Helix 12
AB3
A
707 719Right-handed alpha
Helix 13
AB4
A
745 751Right-handed alpha
Helix 14
AB5
A
773 787Right-handed alpha
Helix 15
AB6
A
799 812Right-handed alpha
Helix 16
AB7
A
844 853Right-handed alpha
Helix 17
AB8
A
872 876Right-handed 310
Helix 18
AB9
A
877 883Right-handed alpha
Helix 19
AC1
A
885 905Right-handed alpha
Helix 20
AC2
A
908 917Right-handed alpha
Helix 21
AC3
A
923 930Right-handed alpha
Helix 22
AC4
A
936 943Right-handed alpha
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There are 3 sheets in PDB entry 8PFP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
616 618first strand
Strand 2
A
638 641parallel
Strand 3
A
591 595parallel
Strand 4
A
662 668parallel
Strand 5
A
699 703parallel
Strand 6
A
567 570parallel
Strand 7
A
724 727parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
735 741first strand
Strand 2
A
862 868parallel
Strand 3
A
835 839parallel
Strand 4
A
767 770parallel
Strand 5
A
817 820parallel
Strand 6
A
791 794parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
754 755first strand
Strand 2
A
762 763anti-parallel
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