Analysis of interatomic Contacts of Structural Units in PDB entry:
8PG0


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8PG0 entry

There are 3 chains in PDB entry 8PG0 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 26GLY 653
H
 GLU 4VAL 130
L
 ILE 3VAL 105
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 25 helices in PDB entry 8PG0. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
26 51Right-handed alpha
Helix 2
AA2
A
51 60Right-handed alpha
Helix 3
AA3
A
62 85Right-handed alpha
Helix 4
AA4
A
92 113Right-handed alpha
Helix 5
AA5
A
113 118Right-handed alpha
Helix 6
AA6
A
170 186Right-handed alpha
Helix 7
AA7
A
187 200Right-handed alpha
Helix 8
AA8
A
208 217Right-handed alpha
Helix 9
AA9
A
217 231Right-handed alpha
Helix 10
AB1
A
257 274Right-handed alpha
Helix 11
AB2
A
275 277Right-handed 310
Helix 12
AB3
A
325 335Right-handed alpha
Helix 13
AB4
A
335 358Right-handed alpha
Helix 14
AB5
A
358 368Right-handed alpha
Helix 15
AB6
A
370 401Right-handed alpha
Helix 16
AB7
A
403 425Right-handed alpha
Helix 17
AB8
A
457 462Right-handed alpha
Helix 18
AB9
A
483 488Right-handed alpha
Helix 19
AC1
A
504 508Right-handed 310
Helix 20
AC2
A
527 561Right-handed alpha
Helix 21
AC3
A
564 566Right-handed 310
Helix 22
AC4
A
567 585Right-handed alpha
Helix 23
AC5
A
586 598Right-handed alpha
Helix 24
AC6
A
617 649Right-handed alpha
Helix 25
AC7
L
80 84Right-handed 310
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There are 8 sheets in PDB entry 8PG0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
435 436first strand
Strand 2
A
480 481parallel
Strand 3
A
473 475anti-parallel
Strand 4
A
519 520anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
491 492first strand
Strand 2
A
501 502anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
599 602first strand
Strand 2
A
613 616anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
6 10first strand
Strand 2
H
21 28anti-parallel
Strand 3
H
81 86anti-parallel
Strand 4
H
71 76anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
61 63first strand
Strand 2
H
48 55anti-parallel
Strand 3
H
36 42anti-parallel
Strand 4
H
96 101anti-parallel
Strand 5
H
126 127anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
103 105first strand
Strand 2
H
112 114anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
4 7first strand
Strand 2
L
20 28anti-parallel
Strand 3
L
71 76anti-parallel
Strand 4
L
63 67anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
46 47first strand
Strand 2
L
34 39anti-parallel
Strand 3
L
86 92anti-parallel
Strand 4
L
97 99anti-parallel
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