Analysis of interatomic Contacts of Structural Units in PDB entry:
8PHB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8PHB entry

There are 2 chains in PDB entry 8PHB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 2GLU 391
B
 ALA 2PHE 390
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 43 helices in PDB entry 8PHB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
10 17Right-handed 310
Helix 2
AA2
A
24 31Right-handed alpha
Helix 3
AA3
A
33 44Right-handed alpha
Helix 4
AA4
A
52 59Right-handed alpha
Helix 5
AA5
A
61 70Right-handed alpha
Helix 6
AA6
A
85 103Right-handed alpha
Helix 7
AA7
A
120 126Right-handed alpha
Helix 8
AA8
A
126 143Right-handed alpha
Helix 9
AA9
A
156 158Right-handed 310
Helix 10
AB1
A
159 171Right-handed alpha
Helix 11
AB2
A
195 200Right-handed alpha
Helix 12
AB3
A
202 212Right-handed alpha
Helix 13
AB4
A
217 224Right-handed alpha
Helix 14
AB5
A
233 235Right-handed 310
Helix 15
AB6
A
248 260Right-handed alpha
Helix 16
AB7
A
269 279Right-handed alpha
Helix 17
AB8
A
279 284Right-handed alpha
Helix 18
AB9
A
285 297Right-handed alpha
Helix 19
AC1
A
342 356Right-handed alpha
Helix 20
AC2
A
357 365Right-handed alpha
Helix 21
AC3
A
365 370Right-handed alpha
Helix 22
AC4
B
10 17Right-handed 310
Helix 23
AC5
B
24 31Right-handed alpha
Helix 24
AC6
B
33 44Right-handed alpha
Helix 25
AC7
B
52 59Right-handed alpha
Helix 26
AC8
B
61 70Right-handed alpha
Helix 27
AC9
B
85 103Right-handed alpha
Helix 28
AD1
B
120 127Right-handed alpha
Helix 29
AD2
B
127 142Right-handed alpha
Helix 30
AD3
B
156 158Right-handed 310
Helix 31
AD4
B
159 171Right-handed alpha
Helix 32
AD5
B
195 200Right-handed alpha
Helix 33
AD6
B
202 213Right-handed alpha
Helix 34
AD7
B
217 222Right-handed alpha
Helix 35
AD8
B
231 236Right-handed alpha
Helix 36
AD9
B
248 260Right-handed alpha
Helix 37
AE1
B
269 279Right-handed alpha
Helix 38
AE2
B
279 284Right-handed alpha
Helix 39
AE3
B
285 296Right-handed alpha
Helix 40
AE4
B
297 302Right-handed alpha
Helix 41
AE5
B
342 356Right-handed alpha
Helix 42
AE6
B
357 365Right-handed alpha
Helix 43
AE7
B
365 370Right-handed alpha
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There are 9 sheets in PDB entry 8PHB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
107 113first strand
Strand 2
A
77 83parallel
Strand 3
A
3 7parallel
Strand 4
A
148 151parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
175 177first strand
Strand 2
A
184 186anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
192 194first strand
Strand 2
B
192 194anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
215 216first strand
Strand 2
A
244 247anti-parallel
Strand 3
A
237 239anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
314 317first strand
Strand 2
A
325 331anti-parallel
Strand 3
A
334 341anti-parallel
Strand 4
A
265 268parallel
Strand 5
A
373 375anti-parallel
Strand 6
B
378 379anti-parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
378 379first strand
Strand 2
B
373 375anti-parallel
Strand 3
B
265 268anti-parallel
Strand 4
B
334 341parallel
Strand 5
B
325 331anti-parallel
Strand 6
B
314 317anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
107 112first strand
Strand 2
B
77 82parallel
Strand 3
B
3 7parallel
Strand 4
B
148 151parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
175 177first strand
Strand 2
B
184 186anti-parallel
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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
215 216first strand
Strand 2
B
244 247anti-parallel
Strand 3
B
237 241anti-parallel
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