Analysis of interatomic Contacts of Structural Units in PDB entry:
8PHD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8PHD entry

There are 4 chains in PDB entry 8PHD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 0ASP 336
B
 PRO 365ILE 465
C
 PRO -4GLU 334
D
 PRO 365ILE 465
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 25 helices in PDB entry 8PHD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
2 9Right-handed alpha
Helix 2
AA2
A
10 15Right-handed alpha
Helix 3
AA3
A
16 22Right-handed 310
Helix 4
AA4
A
31 39Right-handed alpha
Helix 5
AA5
A
83 97Right-handed alpha
Helix 6
AA6
A
110 121Right-handed 310
Helix 7
AA7
A
126 135Right-handed alpha
Helix 8
AA8
A
137 146Right-handed alpha
Helix 9
AA9
A
199 205Right-handed alpha
Helix 10
AB1
A
205 221Right-handed alpha
Helix 11
AB2
A
260 267Right-handed alpha
Helix 12
AB3
A
319 336Right-handed alpha
Helix 13
AB4
C
2 9Right-handed alpha
Helix 14
AB5
C
10 15Right-handed alpha
Helix 15
AB6
C
16 22Right-handed 310
Helix 16
AB7
C
31 39Right-handed alpha
Helix 17
AB8
C
83 97Right-handed alpha
Helix 18
AB9
C
110 121Right-handed 310
Helix 19
AC1
C
126 135Right-handed alpha
Helix 20
AC2
C
137 145Right-handed alpha
Helix 21
AC3
C
199 205Right-handed alpha
Helix 22
AC4
C
205 221Right-handed alpha
Helix 23
AC5
C
260 266Right-handed alpha
Helix 24
AC6
C
301 306Right-handed 310
Helix 25
AC7
C
320 332Right-handed alpha
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There are 6 sheets in PDB entry 8PHD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
25 29first strand
Strand 2
A
163 168anti-parallel
Strand 3
A
101 104anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
242 249first strand
Strand 2
A
230 236anti-parallel
Strand 3
A
177 183anti-parallel
Strand 4
A
186 192anti-parallel
Strand 5
A
286 288parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
366 377first strand
Strand 2
B
424 435anti-parallel
Strand 3
B
411 420anti-parallel
Strand 4
B
403 408anti-parallel
Strand 5
B
440 446anti-parallel
Strand 6
B
451 464anti-parallel
Strand 7
B
366 377anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
25 29first strand
Strand 2
C
163 168anti-parallel
Strand 3
C
101 104anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
242 248first strand
Strand 2
C
230 236anti-parallel
Strand 3
C
177 183anti-parallel
Strand 4
C
186 192anti-parallel
Strand 5
C
286 288parallel
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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
376 377first strand
Strand 2
D
451 464anti-parallel
Strand 3
D
440 446anti-parallel
Strand 4
D
403 408anti-parallel
Strand 5
D
411 420anti-parallel
Strand 6
D
424 435anti-parallel
Strand 7
D
366 374anti-parallel
Strand 8
D
451 464anti-parallel
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