Analysis of interatomic Contacts of Structural Units in PDB entry:
8PHE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8PHE entry

There are 4 chains in PDB entry 8PHE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 38CYS 621
B
 ALA 38CYS 621
C
 THR 320LEU 334
D
 THR 320LEU 334
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 53 helices in PDB entry 8PHE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
39 44Right-handed alpha
Helix 2
AA2
A
60 71Right-handed alpha
Helix 3
AA3
A
74 81Right-handed alpha
Helix 4
AA4
A
83 91Right-handed alpha
Helix 5
AA5
A
94 105Right-handed alpha
Helix 6
AA6
A
112 116Right-handed 310
Helix 7
AA7
A
121 133Right-handed alpha
Helix 8
AA8
A
137 147Right-handed alpha
Helix 9
AA9
A
150 157Right-handed alpha
Helix 10
AB1
A
158 171Right-handed alpha
Helix 11
AB2
A
250 252Right-handed 310
Helix 12
AB3
A
292 303Right-handed alpha
Helix 13
AB4
A
306 328Right-handed alpha
Helix 14
AB5
A
335 338Right-handed 310
Helix 15
AB6
A
339 368Right-handed alpha
Helix 16
AB7
A
375 401Right-handed alpha
Helix 17
AB8
A
402 405Right-handed 310
Helix 18
AB9
A
412 419Right-handed alpha
Helix 19
AC1
A
420 424Right-handed 310
Helix 20
AC2
A
428 453Right-handed alpha
Helix 21
AC3
A
491 493Right-handed 310
Helix 22
AC4
A
494 520Right-handed alpha
Helix 23
AC5
A
521 525Right-handed 310
Helix 24
AC6
A
526 557Right-handed alpha
Helix 25
AC7
A
560 585Right-handed alpha
Helix 26
AC8
A
595 609Right-handed alpha
Helix 27
AC9
B
42 46Right-handed 310
Helix 28
AD1
B
60 81Right-handed alpha
Helix 29
AD2
B
83 91Right-handed alpha
Helix 30
AD3
B
94 105Right-handed alpha
Helix 31
AD4
B
106 109Right-handed 310
Helix 32
AD5
B
112 116Right-handed 310
Helix 33
AD6
B
121 133Right-handed alpha
Helix 34
AD7
B
137 147Right-handed alpha
Helix 35
AD8
B
150 157Right-handed alpha
Helix 36
AD9
B
158 171Right-handed alpha
Helix 37
AE1
B
250 252Right-handed 310
Helix 38
AE2
B
291 302Right-handed alpha
Helix 39
AE3
B
304 327Right-handed alpha
Helix 40
AE4
B
339 368Right-handed alpha
Helix 41
AE5
B
376 401Right-handed alpha
Helix 42
AE6
B
402 405Right-handed 310
Helix 43
AE7
B
412 419Right-handed alpha
Helix 44
AE8
B
420 424Right-handed 310
Helix 45
AE9
B
428 453Right-handed alpha
Helix 46
AF1
B
491 493Right-handed 310
Helix 47
AF2
B
494 519Right-handed alpha
Helix 48
AF3
B
520 525Right-handed 310
Helix 49
AF4
B
526 557Right-handed alpha
Helix 50
AF5
B
560 585Right-handed alpha
Helix 51
AF6
B
595 609Right-handed alpha
Helix 52
AF7
C
321 327Right-handed 310
Helix 53
AF8
D
323 327Right-handed 310
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There are 5 sheets in PDB entry 8PHE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
176 179first strand
Strand 2
A
222 230parallel
Strand 3
A
240 248anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
195 198first strand
Strand 2
A
204 215anti-parallel
Strand 3
A
270 281anti-parallel
Strand 4
A
254 256anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
176 179first strand
Strand 2
B
222 230parallel
Strand 3
B
195 198parallel
Strand 4
B
204 215anti-parallel
Strand 5
B
270 281anti-parallel
Strand 6
B
254 256anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
176 179first strand
Strand 2
B
222 230parallel
Strand 3
B
240 248anti-parallel
Strand 4
B
285 286anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
330 331first strand
Strand 2
B
334 335anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il