Analysis of interatomic Contacts of Structural Units in PDB entry:
8PHF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8PHF entry

There are 2 chains in PDB entry 8PHF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 38CYS 621
B
 ALA 38CYS 621
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 49 helices in PDB entry 8PHF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
49 54Right-handed alpha
Helix 2
AA2
A
60 81Right-handed alpha
Helix 3
AA3
A
83 91Right-handed alpha
Helix 4
AA4
A
94 104Right-handed alpha
Helix 5
AA5
A
112 116Right-handed 310
Helix 6
AA6
A
121 133Right-handed alpha
Helix 7
AA7
A
136 147Right-handed alpha
Helix 8
AA8
A
150 157Right-handed alpha
Helix 9
AA9
A
158 172Right-handed alpha
Helix 10
AB1
A
188 192Right-handed 310
Helix 11
AB2
A
250 252Right-handed 310
Helix 12
AB3
A
291 301Right-handed alpha
Helix 13
AB4
A
305 326Right-handed alpha
Helix 14
AB5
A
339 368Right-handed alpha
Helix 15
AB6
A
375 402Right-handed alpha
Helix 16
AB7
A
403 405Right-handed 310
Helix 17
AB8
A
411 420Right-handed alpha
Helix 18
AB9
A
421 424Right-handed 310
Helix 19
AC1
A
431 449Right-handed alpha
Helix 20
AC2
A
491 493Right-handed 310
Helix 21
AC3
A
494 519Right-handed alpha
Helix 22
AC4
A
521 525Right-handed 310
Helix 23
AC5
A
526 557Right-handed alpha
Helix 24
AC6
A
560 585Right-handed alpha
Helix 25
AC7
A
594 609Right-handed alpha
Helix 26
AC8
B
39 43Right-handed 310
Helix 27
AC9
B
60 81Right-handed alpha
Helix 28
AD1
B
83 91Right-handed alpha
Helix 29
AD2
B
94 105Right-handed alpha
Helix 30
AD3
B
106 109Right-handed 310
Helix 31
AD4
B
112 116Right-handed 310
Helix 32
AD5
B
121 133Right-handed alpha
Helix 33
AD6
B
137 147Right-handed alpha
Helix 34
AD7
B
150 157Right-handed alpha
Helix 35
AD8
B
158 171Right-handed alpha
Helix 36
AD9
B
291 302Right-handed alpha
Helix 37
AE1
B
305 320Right-handed alpha
Helix 38
AE2
B
321 329Right-handed alpha
Helix 39
AE3
B
339 367Right-handed alpha
Helix 40
AE4
B
375 401Right-handed alpha
Helix 41
AE5
B
402 407Right-handed 310
Helix 42
AE6
B
411 425Right-handed alpha
Helix 43
AE7
B
428 449Right-handed alpha
Helix 44
AE8
B
491 493Right-handed 310
Helix 45
AE9
B
494 520Right-handed alpha
Helix 46
AF1
B
521 525Right-handed 310
Helix 47
AF2
B
526 557Right-handed alpha
Helix 48
AF3
B
560 585Right-handed alpha
Helix 49
AF4
B
595 609Right-handed alpha
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There are 6 sheets in PDB entry 8PHF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
176 177first strand
Strand 2
A
222 230parallel
Strand 3
A
240 248anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
195 198first strand
Strand 2
A
204 214anti-parallel
Strand 3
A
271 281anti-parallel
Strand 4
A
254 256anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
330 331first strand
Strand 2
A
334 335anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
176 177first strand
Strand 2
B
222 230parallel
Strand 3
B
240 248anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
195 198first strand
Strand 2
B
204 214anti-parallel
Strand 3
B
271 281anti-parallel
Strand 4
B
254 256anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
330 331first strand
Strand 2
B
334 335anti-parallel
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