Analysis of interatomic Contacts of Structural Units in PDB entry:
8PHH

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8PHH entry

There are 2 chains in PDB entry 8PHH (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	SER 69	LEU 651
A	ILE 71	HIS 652

There are 52 helices in PDB entry 8PHH. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	72	77	Right-handed alpha
Helix 2	AA2	B	78	81	Right-handed 310
Helix 3	AA3	B	98	113	Right-handed alpha
Helix 4	AA4	B	125	148	Right-handed alpha
Helix 5	AA5	B	153	158	Right-handed alpha
Helix 6	AA6	B	165	174	Right-handed alpha
Helix 7	AA7	B	181	186	Right-handed alpha
Helix 8	AA8	B	187	189	Right-handed 310
Helix 9	AA9	B	209	214	Right-handed alpha
Helix 10	AB1	B	220	230	Right-handed alpha
Helix 11	AB2	B	238	245	Right-handed alpha
Helix 12	AB3	B	258	262	Right-handed alpha
Helix 13	AB4	B	283	288	Right-handed alpha
Helix 14	AB5	B	289	291	Right-handed 310
Helix 15	AB6	B	292	302	Right-handed alpha
Helix 16	AB7	B	321	328	Right-handed alpha
Helix 17	AB8	B	333	352	Right-handed alpha
Helix 18	AB9	B	366	371	Right-handed 310
Helix 19	AC1	B	398	406	Right-handed alpha
Helix 20	AC2	B	431	435	Right-handed 310
Helix 21	AC3	B	452	458	Right-handed alpha
Helix 22	AC4	B	474	481	Right-handed alpha
Helix 23	AC5	B	502	507	Right-handed alpha
Helix 24	AC6	B	568	572	Right-handed 310
Helix 25	AC7	B	644	649	Right-handed alpha
Helix 26	AC8	A	72	77	Right-handed alpha
Helix 27	AC9	A	78	81	Right-handed 310
Helix 28	AD1	A	98	111	Right-handed alpha
Helix 29	AD2	A	112	116	Right-handed 310
Helix 30	AD3	A	125	148	Right-handed alpha
Helix 31	AD4	A	153	158	Right-handed alpha
Helix 32	AD5	A	162	174	Right-handed alpha
Helix 33	AD6	A	178	186	Right-handed alpha
Helix 34	AD7	A	187	189	Right-handed 310
Helix 35	AD8	A	209	214	Right-handed alpha
Helix 36	AD9	A	220	232	Right-handed alpha
Helix 37	AE1	A	238	242	Right-handed 310
Helix 38	AE2	A	258	263	Right-handed alpha
Helix 39	AE3	A	281	288	Right-handed alpha
Helix 40	AE4	A	289	291	Right-handed 310
Helix 41	AE5	A	292	294	Right-handed 310
Helix 42	AE6	A	295	300	Right-handed alpha
Helix 43	AE7	A	321	327	Right-handed alpha
Helix 44	AE8	A	333	352	Right-handed alpha
Helix 45	AE9	A	366	371	Right-handed 310
Helix 46	AF1	A	398	406	Right-handed alpha
Helix 47	AF2	A	431	435	Right-handed 310
Helix 48	AF3	A	452	458	Right-handed alpha
Helix 49	AF4	A	471	475	Right-handed 310
Helix 50	AF5	A	476	481	Right-handed alpha
Helix 51	AF6	A	502	507	Right-handed alpha
Helix 52	AF7	A	629	634	Right-handed alpha

There are 13 sheets in PDB entry 8PHH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	191	192	first strand
Strand 2	B	199	203	anti-parallel
Strand 3	B	90	94	parallel
Strand 4	B	609	612	anti-parallel
Strand 5	B	623	626	anti-parallel
Strand 6	B	514	516	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	256	257	first strand
Strand 2	B	247	251	anti-parallel
Strand 3	B	314	315	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	277	278	first strand
Strand 2	B	395	396	parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	605	607	first strand
Strand 2	B	483	486	anti-parallel
Strand 3	B	372	375	parallel
Strand 4	B	461	465	anti-parallel
Strand 5	B	638	642	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	419	420	first strand
Strand 2	A	562	563	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	587	588	first strand
Strand 2	A	545	548	anti-parallel
Strand 3	B	489	495	anti-parallel
Strand 4	A	489	495	anti-parallel
Strand 5	B	546	548	anti-parallel
Strand 6	A	587	588	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	555	559	first strand
Strand 2	A	573	578	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	562	563	first strand
Strand 2	A	419	420	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	573	578	first strand
Strand 2	A	555	559	parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	191	192	first strand
Strand 2	A	199	203	anti-parallel
Strand 3	A	90	94	parallel
Strand 4	A	609	612	anti-parallel
Strand 5	A	623	626	anti-parallel
Strand 6	A	514	516	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	255	257	first strand
Strand 2	A	247	251	anti-parallel
Strand 3	A	314	315	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	277	278	first strand
Strand 2	A	395	396	parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	605	607	first strand
Strand 2	A	483	486	anti-parallel
Strand 3	A	372	375	parallel
Strand 4	A	461	465	anti-parallel
Strand 5	A	638	642	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8PHH

Analysis of interatomic Contacts of Structural Units in PDB entry:
8PHH