Analysis of interatomic Contacts of Structural Units in PDB entry:
8PHM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8PHM entry

There is 1 chain in PDB entry 8PHM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 3LYS 259
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 8 helices in PDB entry 8PHM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
19 24Right-handed 310
Helix 2
AA2
A
125 127Right-handed 310
Helix 3
AA3
A
128 133Right-handed alpha
Helix 4
AA4
A
152 154Right-handed 310
Helix 5
AA5
A
155 162Right-handed alpha
Helix 6
AA6
A
163 165Right-handed 310
Helix 7
AA7
A
178 183Right-handed 310
Helix 8
AA8
A
217 225Right-handed alpha
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There are 3 sheets in PDB entry 8PHM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
31 32first strand
Strand 2
A
107 108parallel
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There are 10 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
38 39first strand
Strand 2
A
255 256parallel
Strand 3
A
189 194anti-parallel
Strand 4
A
205 210anti-parallel
Strand 5
A
139 148parallel
Strand 6
A
115 123anti-parallel
Strand 7
A
86 96anti-parallel
Strand 8
A
65 69anti-parallel
Strand 9
A
55 60anti-parallel
Strand 10
A
171 173anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
44 49first strand
Strand 2
A
77 81anti-parallel
Strand 3
A
86 96anti-parallel
Strand 4
A
115 123anti-parallel
Strand 5
A
139 148anti-parallel
Strand 6
A
214 216parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il