Analysis of interatomic Contacts of Structural Units in PDB entry:
8PHP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8PHP entry

There are 2 chains in PDB entry 8PHP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 13PHE 407
B
 GLN 75LYS 163
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 8PHP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
14 22Right-handed alpha
Helix 2
AA2
A
22 37Right-handed alpha
Helix 3
AA3
A
51 76Right-handed alpha
Helix 4
AA4
A
108 110Right-handed 310
Helix 5
AA5
A
163 184Right-handed alpha
Helix 6
AA6
A
258 266Right-handed alpha
Helix 7
AA7
A
285 303Right-handed alpha
Helix 8
AA8
A
305 311Right-handed alpha
Helix 9
AA9
A
327 353Right-handed alpha
Helix 10
AB1
A
365 389Right-handed alpha
Helix 11
AB2
A
393 403Right-handed alpha
Helix 12
AB3
B
76 92Right-handed alpha
Helix 13
AB4
B
95 98Right-handed 310
Helix 14
AB5
B
99 107Right-handed alpha
Helix 15
AB6
B
109 126Right-handed alpha
Helix 16
AB7
B
127 135Right-handed alpha
Helix 17
AB8
B
145 163Right-handed alpha
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There are 5 sheets in PDB entry 8PHP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
41 45first strand
Strand 2
A
354 358anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
103 107first strand
Strand 2
A
78 84anti-parallel
Strand 3
A
145 149anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
112 113first strand
Strand 2
A
121 124anti-parallel
Strand 3
A
138 141anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
151 152first strand
Strand 2
A
157 158anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
188 193first strand
Strand 2
A
277 282anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il