Analysis of interatomic Contacts of Structural Units in PDB entry:
8PHW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8PHW entry

There are 3 chains in PDB entry 8PHW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 26ALA 646
H
 VAL 5SER 132
L
 SER 1ILE 107
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 8PHW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
27 52Right-handed alpha
Helix 2
AA2
A
64 80Right-handed alpha
Helix 3
AA3
A
96 117Right-handed alpha
Helix 4
AA4
A
171 185Right-handed alpha
Helix 5
AA5
A
188 199Right-handed alpha
Helix 6
AA6
A
208 217Right-handed alpha
Helix 7
AA7
A
217 231Right-handed alpha
Helix 8
AA8
A
241 245Right-handed 310
Helix 9
AA9
A
257 274Right-handed alpha
Helix 10
AB1
A
275 279Right-handed 310
Helix 11
AB2
A
340 366Right-handed alpha
Helix 12
AB3
A
370 381Right-handed alpha
Helix 13
AB4
A
381 400Right-handed alpha
Helix 14
AB5
A
404 423Right-handed alpha
Helix 15
AB6
A
483 487Right-handed 310
Helix 16
AB7
A
527 559Right-handed alpha
Helix 17
AB8
A
570 597Right-handed alpha
Helix 18
AB9
A
617 646Right-handed alpha
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There are 6 sheets in PDB entry 8PHW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
434 435first strand
Strand 2
A
479 481parallel
Strand 3
A
473 474anti-parallel
Strand 4
A
520 521anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
6 10first strand
Strand 2
H
20 28anti-parallel
Strand 3
H
81 87anti-parallel
Strand 4
H
71 76anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
48 54first strand
Strand 2
H
37 42anti-parallel
Strand 3
H
98 101anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
5 7first strand
Strand 2
L
21 26anti-parallel
Strand 3
L
73 75anti-parallel
Strand 4
L
64 66anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
54 55first strand
Strand 2
L
46 50anti-parallel
Strand 3
L
34 39anti-parallel
Strand 4
L
86 92anti-parallel
Strand 5
L
97 98anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
54 55first strand
Strand 2
L
46 50anti-parallel
Strand 3
L
34 39anti-parallel
Strand 4
L
86 92anti-parallel
Strand 5
L
103 104anti-parallel
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