Analysis of interatomic Contacts of Structural Units in PDB entry:
8PHX


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8PHX entry

There are 4 chains in PDB entry 8PHX (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 1240SER 1367
B
 GLY 1239SER 1367
C
 PRO 1238SER 1367
D
 PRO 1238LEU 1366
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 8PHX. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
1252 1266Right-handed alpha
Helix 2
AA2
A
1276 1290Right-handed alpha
Helix 3
AA3
A
1307 1318Right-handed alpha
Helix 4
AA4
A
1334 1344Right-handed alpha
Helix 5
AA5
A
1354 1366Right-handed alpha
Helix 6
AA6
B
1252 1266Right-handed alpha
Helix 7
AA7
B
1276 1290Right-handed alpha
Helix 8
AA8
B
1307 1318Right-handed alpha
Helix 9
AA9
B
1334 1344Right-handed alpha
Helix 10
AB1
B
1354 1367Right-handed alpha
Helix 11
AB2
C
1252 1267Right-handed alpha
Helix 12
AB3
C
1276 1290Right-handed alpha
Helix 13
AB4
C
1307 1318Right-handed alpha
Helix 14
AB5
C
1334 1344Right-handed alpha
Helix 15
AB6
C
1354 1363Right-handed alpha
Helix 16
AB7
C
1364 1366Right-handed 310
Helix 17
AB8
D
1252 1267Right-handed alpha
Helix 18
AB9
D
1276 1290Right-handed alpha
Helix 19
AC1
D
1307 1318Right-handed alpha
Helix 20
AC2
D
1334 1344Right-handed alpha
Helix 21
AC3
D
1354 1366Right-handed alpha
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There are 4 sheets in PDB entry 8PHX. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1270 1274first strand
Strand 2
A
1245 1249parallel
Strand 3
A
1296 1300parallel
Strand 4
A
1325 1329parallel
Strand 5
A
1347 1350parallel
Strand 6
C
1332 1333anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1332 1333first strand
Strand 2
C
1347 1350anti-parallel
Strand 3
C
1325 1329parallel
Strand 4
C
1296 1300parallel
Strand 5
C
1245 1249parallel
Strand 6
C
1270 1274parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1270 1274first strand
Strand 2
B
1245 1249parallel
Strand 3
B
1296 1300parallel
Strand 4
B
1325 1329parallel
Strand 5
B
1347 1350parallel
Strand 6
D
1332 1333anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1332 1333first strand
Strand 2
D
1347 1350anti-parallel
Strand 3
D
1325 1329parallel
Strand 4
D
1296 1300parallel
Strand 5
D
1245 1249parallel
Strand 6
D
1270 1274parallel
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