Analysis of interatomic Contacts of Structural Units in PDB entry:
8PIE

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8PIE entry

There are 12 chains in PDB entry 8PIE (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 6	ILE 121
A	GLY 123	GLU 156
B	ALA 6	ILE 121
B	GLY 123	GLU 156
C	ALA 6	ILE 121
C	GLY 123	GLU 156
D	ALA 6	ILE 121
D	GLY 123	GLU 156
E	ALA 6	ILE 121
E	GLY 123	GLU 156
F	ALA 6	ILE 121
F	GLY 123	GLU 156

There are 72 helices in PDB entry 8PIE. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	16	22	Right-handed alpha
Helix 2	AA2	A	24	36	Right-handed alpha
Helix 3	AA3	A	48	56	Right-handed alpha
Helix 4	AA4	A	57	60	Right-handed 310
Helix 5	AA5	A	64	74	Right-handed alpha
Helix 6	AA6	A	86	96	Right-handed alpha
Helix 7	AA7	A	99	103	Right-handed 310
Helix 8	AA8	A	107	113	Right-handed alpha
Helix 9	AA9	A	115	119	Right-handed 310
Helix 10	AB1	A	126	138	Right-handed alpha
Helix 11	AB2	A	139	143	Right-handed 310
Helix 12	AB3	A	150	155	Right-handed alpha
Helix 13	AB4	B	16	22	Right-handed alpha
Helix 14	AB5	B	24	36	Right-handed alpha
Helix 15	AB6	B	48	56	Right-handed alpha
Helix 16	AB7	B	57	60	Right-handed 310
Helix 17	AB8	B	64	73	Right-handed alpha
Helix 18	AB9	B	86	96	Right-handed alpha
Helix 19	AC1	B	99	103	Right-handed 310
Helix 20	AC2	B	107	113	Right-handed alpha
Helix 21	AC3	B	115	119	Right-handed 310
Helix 22	AC4	B	126	138	Right-handed alpha
Helix 23	AC5	B	139	143	Right-handed 310
Helix 24	AC6	B	150	155	Right-handed alpha
Helix 25	AC7	C	16	22	Right-handed alpha
Helix 26	AC8	C	24	36	Right-handed alpha
Helix 27	AC9	C	48	56	Right-handed alpha
Helix 28	AD1	C	57	60	Right-handed 310
Helix 29	AD2	C	64	74	Right-handed alpha
Helix 30	AD3	C	86	96	Right-handed alpha
Helix 31	AD4	C	99	103	Right-handed 310
Helix 32	AD5	C	107	113	Right-handed alpha
Helix 33	AD6	C	115	119	Right-handed 310
Helix 34	AD7	C	126	138	Right-handed alpha
Helix 35	AD8	C	139	143	Right-handed 310
Helix 36	AD9	C	150	155	Right-handed alpha
Helix 37	AE1	D	16	22	Right-handed alpha
Helix 38	AE2	D	24	36	Right-handed alpha
Helix 39	AE3	D	48	56	Right-handed alpha
Helix 40	AE4	D	57	60	Right-handed 310
Helix 41	AE5	D	64	74	Right-handed alpha
Helix 42	AE6	D	86	96	Right-handed alpha
Helix 43	AE7	D	99	103	Right-handed 310
Helix 44	AE8	D	107	113	Right-handed alpha
Helix 45	AE9	D	115	119	Right-handed 310
Helix 46	AF1	D	126	138	Right-handed alpha
Helix 47	AF2	D	139	143	Right-handed 310
Helix 48	AF3	D	150	155	Right-handed alpha
Helix 49	AF4	E	16	22	Right-handed alpha
Helix 50	AF5	E	24	36	Right-handed alpha
Helix 51	AF6	E	48	56	Right-handed alpha
Helix 52	AF7	E	57	60	Right-handed 310
Helix 53	AF8	E	64	74	Right-handed alpha
Helix 54	AF9	E	86	96	Right-handed alpha
Helix 55	AG1	E	99	103	Right-handed 310
Helix 56	AG2	E	107	113	Right-handed alpha
Helix 57	AG3	E	115	119	Right-handed 310
Helix 58	AG4	E	126	138	Right-handed alpha
Helix 59	AG5	E	139	143	Right-handed 310
Helix 60	AG6	E	150	155	Right-handed alpha
Helix 61	AG7	F	16	22	Right-handed alpha
Helix 62	AG8	F	24	36	Right-handed alpha
Helix 63	AG9	F	48	56	Right-handed alpha
Helix 64	AH1	F	57	60	Right-handed 310
Helix 65	AH2	F	64	74	Right-handed alpha
Helix 66	AH3	F	86	96	Right-handed alpha
Helix 67	AH4	F	99	103	Right-handed 310
Helix 68	AH5	F	107	113	Right-handed alpha
Helix 69	AH6	F	115	119	Right-handed 310
Helix 70	AH7	F	126	138	Right-handed alpha
Helix 71	AH8	F	139	143	Right-handed 310
Helix 72	AH9	F	150	155	Right-handed alpha

There are 6 sheets in PDB entry 8PIE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	38	45	first strand
Strand 2	A	77	83	anti-parallel
Strand 3	A	10	15	anti-parallel
Strand 4	A	121	123	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	38	45	first strand
Strand 2	B	77	83	anti-parallel
Strand 3	B	10	15	anti-parallel
Strand 4	B	121	123	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	38	45	first strand
Strand 2	C	77	83	anti-parallel
Strand 3	C	10	15	anti-parallel
Strand 4	C	121	123	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	38	45	first strand
Strand 2	D	77	83	anti-parallel
Strand 3	D	10	15	anti-parallel
Strand 4	D	121	123	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	38	45	first strand
Strand 2	E	77	83	anti-parallel
Strand 3	E	10	15	anti-parallel
Strand 4	E	121	123	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	38	45	first strand
Strand 2	F	77	83	anti-parallel
Strand 3	F	10	15	anti-parallel
Strand 4	F	121	123	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8PIE

Analysis of interatomic Contacts of Structural Units in PDB entry:
8PIE