Analysis of interatomic Contacts of Structural Units in PDB entry:
8PIN

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8PIN entry

There are 7 chains in PDB entry 8PIN (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 49	TYR 469
C	LEU 51	TYR 469
D	PRO 48	TYR 469
B	LYS 46	TYR 469
F	UNK 1	UNK 8
G	UNK 1	UNK 8
H	UNK 1	UNK 8

There are 59 helices in PDB entry 8PIN. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	68	79	Right-handed alpha
Helix 2	AA2	A	90	99	Right-handed alpha
Helix 3	AA3	A	113	119	Right-handed alpha
Helix 4	AA4	A	137	144	Right-handed alpha
Helix 5	AA5	A	155	173	Right-handed alpha
Helix 6	AA6	A	173	183	Right-handed alpha
Helix 7	AA7	A	207	220	Right-handed alpha
Helix 8	AA8	A	243	251	Right-handed alpha
Helix 9	AA9	A	269	275	Right-handed alpha
Helix 10	AB1	A	292	302	Right-handed alpha
Helix 11	AB2	A	332	339	Right-handed alpha
Helix 12	AB3	A	352	374	Right-handed alpha
Helix 13	AB4	A	409	418	Right-handed alpha
Helix 14	AB5	A	419	421	Right-handed 310
Helix 15	AB6	A	445	458	Right-handed alpha
Helix 16	AB7	C	68	79	Right-handed alpha
Helix 17	AB8	C	90	99	Right-handed alpha
Helix 18	AB9	C	113	119	Right-handed alpha
Helix 19	AC1	C	137	144	Right-handed alpha
Helix 20	AC2	C	155	173	Right-handed alpha
Helix 21	AC3	C	173	183	Right-handed alpha
Helix 22	AC4	C	207	220	Right-handed alpha
Helix 23	AC5	C	243	251	Right-handed alpha
Helix 24	AC6	C	269	275	Right-handed alpha
Helix 25	AC7	C	292	302	Right-handed alpha
Helix 26	AC8	C	332	338	Right-handed alpha
Helix 27	AC9	C	352	373	Right-handed alpha
Helix 28	AD1	C	409	418	Right-handed alpha
Helix 29	AD2	C	445	458	Right-handed alpha
Helix 30	AD3	D	68	79	Right-handed alpha
Helix 31	AD4	D	90	99	Right-handed alpha
Helix 32	AD5	D	113	119	Right-handed alpha
Helix 33	AD6	D	137	144	Right-handed alpha
Helix 34	AD7	D	155	173	Right-handed alpha
Helix 35	AD8	D	173	183	Right-handed alpha
Helix 36	AD9	D	207	220	Right-handed alpha
Helix 37	AE1	D	243	251	Right-handed alpha
Helix 38	AE2	D	269	275	Right-handed alpha
Helix 39	AE3	D	292	302	Right-handed alpha
Helix 40	AE4	D	332	338	Right-handed alpha
Helix 41	AE5	D	352	374	Right-handed alpha
Helix 42	AE6	D	409	418	Right-handed alpha
Helix 43	AE7	D	419	421	Right-handed 310
Helix 44	AE8	D	445	459	Right-handed alpha
Helix 45	AE9	B	68	79	Right-handed alpha
Helix 46	AF1	B	90	96	Right-handed alpha
Helix 47	AF2	B	113	119	Right-handed alpha
Helix 48	AF3	B	137	144	Right-handed alpha
Helix 49	AF4	B	155	173	Right-handed alpha
Helix 50	AF5	B	173	183	Right-handed alpha
Helix 51	AF6	B	207	220	Right-handed alpha
Helix 52	AF7	B	243	251	Right-handed alpha
Helix 53	AF8	B	269	276	Right-handed alpha
Helix 54	AF9	B	292	302	Right-handed alpha
Helix 55	AG1	B	332	338	Right-handed alpha
Helix 56	AG2	B	352	373	Right-handed alpha
Helix 57	AG3	B	409	418	Right-handed alpha
Helix 58	AG4	B	419	421	Right-handed 310
Helix 59	AG5	B	445	458	Right-handed alpha

There are 10 sheets in PDB entry 8PIN. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	81	84	first strand
Strand 2	A	60	63	parallel
Strand 3	A	103	106	parallel
Strand 4	A	125	128	parallel
Strand 5	A	147	149	parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	239	240	first strand
Strand 2	A	223	226	parallel
Strand 3	A	200	203	parallel
Strand 4	A	253	256	parallel
Strand 5	A	280	284	parallel
Strand 6	A	305	310	parallel
Strand 7	A	342	344	parallel

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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	462	468	first strand
Strand 2	A	398	405	anti-parallel
Strand 3	A	434	442	anti-parallel
Strand 4	A	422	430	anti-parallel
Strand 5	B	423	430	anti-parallel
Strand 6	B	434	441	anti-parallel
Strand 7	B	398	405	anti-parallel
Strand 8	B	462	467	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	81	84	first strand
Strand 2	C	60	63	parallel
Strand 3	C	103	106	parallel
Strand 4	C	125	128	parallel
Strand 5	C	147	149	parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	239	240	first strand
Strand 2	C	223	227	parallel
Strand 3	C	200	204	parallel
Strand 4	C	253	256	parallel
Strand 5	C	280	284	parallel
Strand 6	C	305	310	parallel
Strand 7	C	342	344	parallel

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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	462	468	first strand
Strand 2	C	398	405	anti-parallel
Strand 3	C	434	441	anti-parallel
Strand 4	C	423	431	anti-parallel
Strand 5	D	423	431	anti-parallel
Strand 6	D	434	441	anti-parallel
Strand 7	D	398	405	anti-parallel
Strand 8	D	462	464	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	81	84	first strand
Strand 2	D	60	63	parallel
Strand 3	D	103	106	parallel
Strand 4	D	125	128	parallel
Strand 5	D	147	149	parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	239	240	first strand
Strand 2	D	223	227	parallel
Strand 3	D	200	204	parallel
Strand 4	D	253	256	parallel
Strand 5	D	280	284	parallel
Strand 6	D	305	310	parallel
Strand 7	D	342	344	parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	81	82	first strand
Strand 2	B	60	63	parallel
Strand 3	B	104	106	parallel
Strand 4	B	125	128	parallel
Strand 5	B	147	149	parallel

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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	239	240	first strand
Strand 2	B	223	227	parallel
Strand 3	B	200	204	parallel
Strand 4	B	253	256	parallel
Strand 5	B	281	284	parallel
Strand 6	B	307	310	parallel
Strand 7	B	342	344	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8PIN

Analysis of interatomic Contacts of Structural Units in PDB entry:
8PIN