Analysis of interatomic Contacts of Structural Units in PDB entry:
8PIO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8PIO entry

There are 4 chains in PDB entry 8PIO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
F
 ALA 25TYR 469
A
 SER 22TYR 469
B
 GLY 24TYR 469
C
 PRO 23TYR 469
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 56 helices in PDB entry 8PIO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
F
68 77Right-handed alpha
Helix 2
AA2
F
90 98Right-handed alpha
Helix 3
AA3
F
113 118Right-handed alpha
Helix 4
AA4
F
137 144Right-handed alpha
Helix 5
AA5
F
155 173Right-handed alpha
Helix 6
AA6
F
173 183Right-handed alpha
Helix 7
AA7
F
207 220Right-handed alpha
Helix 8
AA8
F
243 251Right-handed alpha
Helix 9
AA9
F
269 276Right-handed alpha
Helix 10
AB1
F
292 302Right-handed alpha
Helix 11
AB2
F
332 337Right-handed alpha
Helix 12
AB3
F
352 374Right-handed alpha
Helix 13
AB4
F
409 418Right-handed alpha
Helix 14
AB5
F
445 458Right-handed alpha
Helix 15
AB6
A
68 77Right-handed alpha
Helix 16
AB7
A
90 98Right-handed alpha
Helix 17
AB8
A
113 118Right-handed alpha
Helix 18
AB9
A
137 144Right-handed alpha
Helix 19
AC1
A
155 173Right-handed alpha
Helix 20
AC2
A
173 183Right-handed alpha
Helix 21
AC3
A
207 220Right-handed alpha
Helix 22
AC4
A
243 251Right-handed alpha
Helix 23
AC5
A
269 276Right-handed alpha
Helix 24
AC6
A
292 302Right-handed alpha
Helix 25
AC7
A
332 337Right-handed alpha
Helix 26
AC8
A
352 374Right-handed alpha
Helix 27
AC9
A
409 418Right-handed alpha
Helix 28
AD1
A
445 458Right-handed alpha
Helix 29
AD2
B
68 77Right-handed alpha
Helix 30
AD3
B
90 98Right-handed alpha
Helix 31
AD4
B
113 118Right-handed alpha
Helix 32
AD5
B
137 144Right-handed alpha
Helix 33
AD6
B
155 173Right-handed alpha
Helix 34
AD7
B
173 183Right-handed alpha
Helix 35
AD8
B
207 220Right-handed alpha
Helix 36
AD9
B
243 251Right-handed alpha
Helix 37
AE1
B
269 276Right-handed alpha
Helix 38
AE2
B
292 302Right-handed alpha
Helix 39
AE3
B
332 337Right-handed alpha
Helix 40
AE4
B
352 374Right-handed alpha
Helix 41
AE5
B
409 418Right-handed alpha
Helix 42
AE6
B
445 458Right-handed alpha
Helix 43
AE7
C
68 77Right-handed alpha
Helix 44
AE8
C
90 98Right-handed alpha
Helix 45
AE9
C
113 118Right-handed alpha
Helix 46
AF1
C
137 144Right-handed alpha
Helix 47
AF2
C
155 173Right-handed alpha
Helix 48
AF3
C
173 183Right-handed alpha
Helix 49
AF4
C
207 220Right-handed alpha
Helix 50
AF5
C
243 251Right-handed alpha
Helix 51
AF6
C
269 276Right-handed alpha
Helix 52
AF7
C
292 302Right-handed alpha
Helix 53
AF8
C
332 337Right-handed alpha
Helix 54
AF9
C
352 374Right-handed alpha
Helix 55
AG1
C
409 418Right-handed alpha
Helix 56
AG2
C
445 458Right-handed alpha
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There are 10 sheets in PDB entry 8PIO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
52 53first strand
Strand 2
F
462 469anti-parallel
Strand 3
F
397 405anti-parallel
Strand 4
F
434 442anti-parallel
Strand 5
F
423 431anti-parallel
Strand 6
A
423 431anti-parallel
Strand 7
A
434 442anti-parallel
Strand 8
A
397 405anti-parallel
Strand 9
A
462 469anti-parallel
Strand 10
A
52 53anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
81 84first strand
Strand 2
F
60 63parallel
Strand 3
F
103 106parallel
Strand 4
F
125 128parallel
Strand 5
F
147 149parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
239 240first strand
Strand 2
F
223 227parallel
Strand 3
F
200 204parallel
Strand 4
F
253 256parallel
Strand 5
F
280 284parallel
Strand 6
F
305 310parallel
Strand 7
F
342 344parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
81 84first strand
Strand 2
A
60 63parallel
Strand 3
A
103 106parallel
Strand 4
A
125 128parallel
Strand 5
A
147 149parallel
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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
239 240first strand
Strand 2
A
223 227parallel
Strand 3
A
200 204parallel
Strand 4
A
253 256parallel
Strand 5
A
280 284parallel
Strand 6
A
305 310parallel
Strand 7
A
342 344parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
81 84first strand
Strand 2
B
60 63parallel
Strand 3
B
103 106parallel
Strand 4
B
125 128parallel
Strand 5
B
147 149parallel
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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
239 240first strand
Strand 2
B
223 227parallel
Strand 3
B
200 204parallel
Strand 4
B
253 256parallel
Strand 5
B
280 284parallel
Strand 6
B
305 310parallel
Strand 7
B
342 344parallel
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There are 8 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
462 468first strand
Strand 2
B
397 405anti-parallel
Strand 3
B
434 442anti-parallel
Strand 4
B
423 431anti-parallel
Strand 5
C
423 431anti-parallel
Strand 6
C
434 442anti-parallel
Strand 7
C
397 405anti-parallel
Strand 8
C
462 468anti-parallel
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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
81 84first strand
Strand 2
C
60 63parallel
Strand 3
C
103 106parallel
Strand 4
C
125 128parallel
Strand 5
C
147 149parallel
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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
239 240first strand
Strand 2
C
223 227parallel
Strand 3
C
200 204parallel
Strand 4
C
253 256parallel
Strand 5
C
280 284parallel
Strand 6
C
305 310parallel
Strand 7
C
342 344parallel
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