Analysis of interatomic Contacts of Structural Units in PDB entry:
8PIS

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8PIS entry

There are 16 chains in PDB entry 8PIS (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 39	TYR 469
B	PRO 39	TYR 469
C	GLN 47	TYR 469
D	PRO 39	TYR 469
E	PRO 39	TYR 469
F	PRO 39	TYR 469
G	PRO 39	TYR 469
H	PRO 39	TYR 469
I	UNK 2	UNK 9
J	UNK 1	UNK 9
K	UNK 2	UNK 8
M	UNK 1	UNK 8
N	UNK 1	UNK 8
O	UNK 2	UNK 9
Q	UNK 2	UNK 10
L	UNK 1	UNK 9

There are115 helices in PDB entry 8PIS. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	68	78	Right-handed alpha
Helix 2	AA2	A	90	99	Right-handed alpha
Helix 3	AA3	A	113	118	Right-handed alpha
Helix 4	AA4	A	137	144	Right-handed alpha
Helix 5	AA5	A	155	173	Right-handed alpha
Helix 6	AA6	A	173	183	Right-handed alpha
Helix 7	AA7	A	207	220	Right-handed alpha
Helix 8	AA8	A	243	251	Right-handed alpha
Helix 9	AA9	A	269	276	Right-handed alpha
Helix 10	AB1	A	292	302	Right-handed alpha
Helix 11	AB2	A	332	338	Right-handed alpha
Helix 12	AB3	A	352	373	Right-handed alpha
Helix 13	AB4	A	409	418	Right-handed alpha
Helix 14	AB5	A	445	458	Right-handed alpha
Helix 15	AB6	B	68	78	Right-handed alpha
Helix 16	AB7	B	90	99	Right-handed alpha
Helix 17	AB8	B	113	118	Right-handed alpha
Helix 18	AB9	B	137	144	Right-handed alpha
Helix 19	AC1	B	155	173	Right-handed alpha
Helix 20	AC2	B	173	183	Right-handed alpha
Helix 21	AC3	B	207	220	Right-handed alpha
Helix 22	AC4	B	243	251	Right-handed alpha
Helix 23	AC5	B	269	275	Right-handed alpha
Helix 24	AC6	B	292	302	Right-handed alpha
Helix 25	AC7	B	332	337	Right-handed alpha
Helix 26	AC8	B	352	374	Right-handed alpha
Helix 27	AC9	B	409	418	Right-handed alpha
Helix 28	AD1	B	445	459	Right-handed alpha
Helix 29	AD2	C	68	78	Right-handed alpha
Helix 30	AD3	C	90	99	Right-handed alpha
Helix 31	AD4	C	113	118	Right-handed alpha
Helix 32	AD5	C	137	144	Right-handed alpha
Helix 33	AD6	C	155	173	Right-handed alpha
Helix 34	AD7	C	173	183	Right-handed alpha
Helix 35	AD8	C	207	220	Right-handed alpha
Helix 36	AD9	C	243	251	Right-handed alpha
Helix 37	AE1	C	269	275	Right-handed alpha
Helix 38	AE2	C	292	302	Right-handed alpha
Helix 39	AE3	C	332	338	Right-handed alpha
Helix 40	AE4	C	352	373	Right-handed alpha
Helix 41	AE5	C	409	418	Right-handed alpha
Helix 42	AE6	C	445	458	Right-handed alpha
Helix 43	AE7	D	68	78	Right-handed alpha
Helix 44	AE8	D	90	99	Right-handed alpha
Helix 45	AE9	D	113	118	Right-handed alpha
Helix 46	AF1	D	137	144	Right-handed alpha
Helix 47	AF2	D	155	173	Right-handed alpha
Helix 48	AF3	D	173	182	Right-handed alpha
Helix 49	AF4	D	207	220	Right-handed alpha
Helix 50	AF5	D	243	251	Right-handed alpha
Helix 51	AF6	D	269	274	Right-handed alpha
Helix 52	AF7	D	292	302	Right-handed alpha
Helix 53	AF8	D	332	338	Right-handed alpha
Helix 54	AF9	D	352	373	Right-handed alpha
Helix 55	AG1	D	409	418	Right-handed alpha
Helix 56	AG2	D	445	458	Right-handed alpha
Helix 57	AG3	E	68	78	Right-handed alpha
Helix 58	AG4	E	90	99	Right-handed alpha
Helix 59	AG5	E	113	118	Right-handed alpha
Helix 60	AG6	E	137	144	Right-handed alpha
Helix 61	AG7	E	155	173	Right-handed alpha
Helix 62	AG8	E	173	183	Right-handed alpha
Helix 63	AG9	E	207	220	Right-handed alpha
Helix 64	AH1	E	243	251	Right-handed alpha
Helix 65	AH2	E	269	276	Right-handed alpha
Helix 66	AH3	E	292	302	Right-handed alpha
Helix 67	AH4	E	332	338	Right-handed alpha
Helix 68	AH5	E	352	373	Right-handed alpha
Helix 69	AH6	E	409	418	Right-handed alpha
Helix 70	AH7	E	445	458	Right-handed alpha
Helix 71	AH8	F	68	78	Right-handed alpha
Helix 72	AH9	F	90	99	Right-handed alpha
Helix 73	AI1	F	113	118	Right-handed alpha
Helix 74	AI2	F	137	144	Right-handed alpha
Helix 75	AI3	F	155	173	Right-handed alpha
Helix 76	AI4	F	173	183	Right-handed alpha
Helix 77	AI5	F	207	220	Right-handed alpha
Helix 78	AI6	F	243	251	Right-handed alpha
Helix 79	AI7	F	269	275	Right-handed alpha
Helix 80	AI8	F	292	302	Right-handed alpha
Helix 81	AI9	F	321	325	Right-handed 310
Helix 82	AJ1	F	332	338	Right-handed alpha
Helix 83	AJ2	F	352	374	Right-handed alpha
Helix 84	AJ3	F	409	418	Right-handed alpha
Helix 85	AJ4	F	445	458	Right-handed alpha
Helix 86	AJ5	G	68	78	Right-handed alpha
Helix 87	AJ6	G	90	99	Right-handed alpha
Helix 88	AJ7	G	113	118	Right-handed alpha
Helix 89	AJ8	G	137	144	Right-handed alpha
Helix 90	AJ9	G	155	173	Right-handed alpha
Helix 91	AK1	G	173	183	Right-handed alpha
Helix 92	AK2	G	207	220	Right-handed alpha
Helix 93	AK3	G	243	251	Right-handed alpha
Helix 94	AK4	G	269	276	Right-handed alpha
Helix 95	AK5	G	292	302	Right-handed alpha
Helix 96	AK6	G	321	325	Right-handed 310
Helix 97	AK7	G	332	337	Right-handed alpha
Helix 98	AK8	G	352	374	Right-handed alpha
Helix 99	AK9	G	391	395	Right-handed 310
Helix 100	AL1	G	409	418	Right-handed alpha
Helix 101	AL2	G	445	458	Right-handed alpha
Helix 102	AL3	H	68	78	Right-handed alpha
Helix 103	AL4	H	90	99	Right-handed alpha
Helix 104	AL5	H	113	118	Right-handed alpha
Helix 105	AL6	H	137	144	Right-handed alpha
Helix 106	AL7	H	155	173	Right-handed alpha
Helix 107	AL8	H	173	183	Right-handed alpha
Helix 108	AL9	H	207	220	Right-handed alpha
Helix 109	AM1	H	243	251	Right-handed alpha
Helix 110	AM2	H	269	275	Right-handed alpha
Helix 111	AM3	H	292	302	Right-handed alpha
Helix 112	AM4	H	332	337	Right-handed alpha
Helix 113	AM5	H	352	372	Right-handed alpha
Helix 114	AM6	H	409	418	Right-handed alpha
Helix 115	AM7	H	445	458	Right-handed alpha

There are 20 sheets in PDB entry 8PIS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	81	84	first strand
Strand 2	A	60	63	parallel
Strand 3	A	103	106	parallel
Strand 4	A	125	128	parallel
Strand 5	A	147	149	parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	239	240	first strand
Strand 2	A	223	227	parallel
Strand 3	A	200	204	parallel
Strand 4	A	253	256	parallel
Strand 5	A	280	284	parallel
Strand 6	A	305	310	parallel
Strand 7	A	342	344	parallel

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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	462	468	first strand
Strand 2	A	398	405	anti-parallel
Strand 3	A	434	441	anti-parallel
Strand 4	A	423	431	anti-parallel
Strand 5	B	423	431	anti-parallel
Strand 6	B	434	441	anti-parallel
Strand 7	B	398	405	anti-parallel
Strand 8	B	462	468	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	81	84	first strand
Strand 2	B	60	63	parallel
Strand 3	B	103	106	parallel
Strand 4	B	125	128	parallel
Strand 5	B	147	149	parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	239	240	first strand
Strand 2	B	223	227	parallel
Strand 3	B	200	204	parallel
Strand 4	B	253	256	parallel
Strand 5	B	280	284	parallel
Strand 6	B	305	310	parallel
Strand 7	B	342	344	parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	81	84	first strand
Strand 2	C	60	63	parallel
Strand 3	C	103	106	parallel
Strand 4	C	125	128	parallel
Strand 5	C	147	149	parallel

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	239	240	first strand
Strand 2	C	223	227	parallel
Strand 3	C	200	204	parallel
Strand 4	C	253	256	parallel
Strand 5	C	280	284	parallel
Strand 6	C	305	310	parallel
Strand 7	C	342	344	parallel

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There are 8 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	462	468	first strand
Strand 2	C	398	405	anti-parallel
Strand 3	C	434	441	anti-parallel
Strand 4	C	423	431	anti-parallel
Strand 5	D	423	431	anti-parallel
Strand 6	D	434	441	anti-parallel
Strand 7	D	398	405	anti-parallel
Strand 8	D	462	468	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	81	84	first strand
Strand 2	D	60	63	parallel
Strand 3	D	103	106	parallel
Strand 4	D	125	128	parallel
Strand 5	D	147	149	parallel

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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	239	240	first strand
Strand 2	D	223	227	parallel
Strand 3	D	200	204	parallel
Strand 4	D	253	256	parallel
Strand 5	D	280	284	parallel
Strand 6	D	305	310	parallel
Strand 7	D	342	344	parallel

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There are 9 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	52	53	first strand
Strand 2	E	462	469	anti-parallel
Strand 3	E	398	405	anti-parallel
Strand 4	E	434	441	anti-parallel
Strand 5	E	423	431	anti-parallel
Strand 6	F	423	431	anti-parallel
Strand 7	F	434	441	anti-parallel
Strand 8	F	398	405	anti-parallel
Strand 9	F	462	468	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	81	84	first strand
Strand 2	E	60	63	parallel
Strand 3	E	103	106	parallel
Strand 4	E	125	128	parallel
Strand 5	E	147	150	parallel

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There are 7 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	239	240	first strand
Strand 2	E	223	227	parallel
Strand 3	E	200	204	parallel
Strand 4	E	253	256	parallel
Strand 5	E	280	284	parallel
Strand 6	E	305	310	parallel
Strand 7	E	342	344	parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	81	84	first strand
Strand 2	F	60	63	parallel
Strand 3	F	103	106	parallel
Strand 4	F	125	128	parallel
Strand 5	F	147	149	parallel

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There are 7 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	239	240	first strand
Strand 2	F	223	227	parallel
Strand 3	F	200	204	parallel
Strand 4	F	253	256	parallel
Strand 5	F	280	284	parallel
Strand 6	F	305	310	parallel
Strand 7	F	342	344	parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	81	84	first strand
Strand 2	G	60	63	parallel
Strand 3	G	103	106	parallel
Strand 4	G	125	128	parallel
Strand 5	G	147	149	parallel

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There are 7 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	239	240	first strand
Strand 2	G	223	227	parallel
Strand 3	G	200	204	parallel
Strand 4	G	253	256	parallel
Strand 5	G	280	284	parallel
Strand 6	G	305	310	parallel
Strand 7	G	342	344	parallel

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There are 8 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	462	468	first strand
Strand 2	G	398	405	anti-parallel
Strand 3	G	434	441	anti-parallel
Strand 4	G	423	431	anti-parallel
Strand 5	H	423	431	anti-parallel
Strand 6	H	434	441	anti-parallel
Strand 7	H	398	405	anti-parallel
Strand 8	H	462	468	anti-parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	81	84	first strand
Strand 2	H	60	63	parallel
Strand 3	H	103	106	parallel
Strand 4	H	125	128	parallel
Strand 5	H	147	149	parallel

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There are 7 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	239	240	first strand
Strand 2	H	223	227	parallel
Strand 3	H	200	204	parallel
Strand 4	H	253	256	parallel
Strand 5	H	280	284	parallel
Strand 6	H	305	310	parallel
Strand 7	H	342	344	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8PIS

Analysis of interatomic Contacts of Structural Units in PDB entry:
8PIS