Analysis of interatomic Contacts of Structural Units in PDB entry:
8PIV

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8PIV entry

There are 8 chains in PDB entry 8PIV (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 393	LYS 823
B	LYS 393	LYS 823
C	LYS 393	LYS 823
D	LYS 393	LYS 823
E	ASP 5	ALA 210
F	ASP 5	ALA 210
G	ASP 5	ALA 210
H	ASP 5	ALA 210

There are 93 helices in PDB entry 8PIV. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	411	415	Right-handed 310
Helix 2	AA2	A	416	419	Right-handed 310
Helix 3	AA3	A	423	437	Right-handed alpha
Helix 4	AA4	A	461	469	Right-handed alpha
Helix 5	AA5	A	482	487	Right-handed alpha
Helix 6	AA6	A	515	519	Right-handed 310
Helix 7	AA7	A	522	546	Right-handed alpha
Helix 8	AA8	A	547	551	Right-handed 310
Helix 9	AA9	A	572	585	Right-handed alpha
Helix 10	AB1	A	595	629	Right-handed alpha
Helix 11	AB2	A	635	641	Right-handed alpha
Helix 12	AB3	A	653	662	Right-handed alpha
Helix 13	AB4	A	664	677	Right-handed alpha
Helix 14	AB5	A	685	696	Right-handed alpha
Helix 15	AB6	A	706	714	Right-handed alpha
Helix 16	AB7	A	742	756	Right-handed alpha
Helix 17	AB8	A	757	768	Right-handed alpha
Helix 18	AB9	A	788	791	Right-handed 310
Helix 19	AC1	A	792	820	Right-handed alpha
Helix 20	AC2	B	411	415	Right-handed 310
Helix 21	AC3	B	416	419	Right-handed 310
Helix 22	AC4	B	423	437	Right-handed alpha
Helix 23	AC5	B	461	469	Right-handed alpha
Helix 24	AC6	B	482	487	Right-handed alpha
Helix 25	AC7	B	515	519	Right-handed 310
Helix 26	AC8	B	522	546	Right-handed alpha
Helix 27	AC9	B	572	585	Right-handed alpha
Helix 28	AD1	B	595	625	Right-handed alpha
Helix 29	AD2	B	636	637	Right-handed 310
Helix 30	AD3	B	639	642	Right-handed 310
Helix 31	AD4	B	653	662	Right-handed alpha
Helix 32	AD5	B	664	677	Right-handed alpha
Helix 33	AD6	B	685	696	Right-handed alpha
Helix 34	AD7	B	706	714	Right-handed alpha
Helix 35	AD8	B	742	756	Right-handed alpha
Helix 36	AD9	B	757	768	Right-handed alpha
Helix 37	AE1	B	792	823	Right-handed alpha
Helix 38	AE2	C	411	415	Right-handed 310
Helix 39	AE3	C	416	419	Right-handed 310
Helix 40	AE4	C	423	437	Right-handed alpha
Helix 41	AE5	C	461	469	Right-handed alpha
Helix 42	AE6	C	482	487	Right-handed alpha
Helix 43	AE7	C	515	519	Right-handed 310
Helix 44	AE8	C	522	546	Right-handed alpha
Helix 45	AE9	C	547	551	Right-handed 310
Helix 46	AF1	C	572	585	Right-handed alpha
Helix 47	AF2	C	595	626	Right-handed alpha
Helix 48	AF3	C	635	641	Right-handed alpha
Helix 49	AF4	C	653	662	Right-handed alpha
Helix 50	AF5	C	664	677	Right-handed alpha
Helix 51	AF6	C	685	696	Right-handed alpha
Helix 52	AF7	C	706	714	Right-handed alpha
Helix 53	AF8	C	742	756	Right-handed alpha
Helix 54	AF9	C	757	768	Right-handed alpha
Helix 55	AG1	C	792	821	Right-handed alpha
Helix 56	AG2	D	411	415	Right-handed 310
Helix 57	AG3	D	416	419	Right-handed 310
Helix 58	AG4	D	423	437	Right-handed alpha
Helix 59	AG5	D	461	469	Right-handed alpha
Helix 60	AG6	D	482	487	Right-handed alpha
Helix 61	AG7	D	515	519	Right-handed 310
Helix 62	AG8	D	522	545	Right-handed alpha
Helix 63	AG9	D	572	585	Right-handed alpha
Helix 64	AH1	D	595	626	Right-handed alpha
Helix 65	AH2	D	653	662	Right-handed alpha
Helix 66	AH3	D	664	677	Right-handed alpha
Helix 67	AH4	D	685	696	Right-handed alpha
Helix 68	AH5	D	708	709	Right-handed 310
Helix 69	AH6	D	711	715	Right-handed 310
Helix 70	AH7	D	742	756	Right-handed alpha
Helix 71	AH8	D	757	768	Right-handed alpha
Helix 72	AH9	D	788	791	Right-handed 310
Helix 73	AI1	D	792	823	Right-handed alpha
Helix 74	AI2	E	7	30	Right-handed alpha
Helix 75	AI3	E	93	104	Right-handed alpha
Helix 76	AI4	E	105	125	Right-handed alpha
Helix 77	AI5	E	133	160	Right-handed alpha
Helix 78	AI6	E	177	210	Right-handed alpha
Helix 79	AI7	F	6	28	Right-handed alpha
Helix 80	AI8	F	93	104	Right-handed alpha
Helix 81	AI9	F	105	127	Right-handed alpha
Helix 82	AJ1	F	133	160	Right-handed alpha
Helix 83	AJ2	F	177	209	Right-handed alpha
Helix 84	AJ3	G	7	30	Right-handed alpha
Helix 85	AJ4	G	93	104	Right-handed alpha
Helix 86	AJ5	G	105	127	Right-handed alpha
Helix 87	AJ6	G	133	162	Right-handed alpha
Helix 88	AJ7	G	177	210	Right-handed alpha
Helix 89	AJ8	H	6	30	Right-handed alpha
Helix 90	AJ9	H	94	104	Right-handed alpha
Helix 91	AK1	H	105	124	Right-handed alpha
Helix 92	AK2	H	133	161	Right-handed alpha
Helix 93	AK3	H	177	210	Right-handed alpha

There are 27 sheets in PDB entry 8PIV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	440	444	first strand
Strand 2	A	395	399	parallel
Strand 3	A	474	475	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	407	408	first strand
Strand 2	A	421	422	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	489	491	first strand
Strand 2	A	735	737	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	496	498	first strand
Strand 2	A	730	732	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	646	648	first strand
Strand 2	A	700	705	parallel
Strand 3	A	500	503	anti-parallel
Strand 4	A	722	723	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	440	444	first strand
Strand 2	B	395	399	parallel
Strand 3	B	474	475	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	407	408	first strand
Strand 2	B	421	422	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	489	491	first strand
Strand 2	B	735	737	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	496	498	first strand
Strand 2	B	730	732	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	646	648	first strand
Strand 2	B	700	705	parallel
Strand 3	B	500	505	anti-parallel
Strand 4	B	720	723	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	440	444	first strand
Strand 2	C	395	399	parallel
Strand 3	C	474	475	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	407	408	first strand
Strand 2	C	421	422	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	489	491	first strand
Strand 2	C	735	737	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	496	498	first strand
Strand 2	C	730	732	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	646	648	first strand
Strand 2	C	700	705	parallel
Strand 3	C	500	505	anti-parallel
Strand 4	C	720	723	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	440	444	first strand
Strand 2	D	395	399	parallel
Strand 3	D	474	475	parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	407	408	first strand
Strand 2	D	421	422	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	489	491	first strand
Strand 2	D	735	737	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	496	498	first strand
Strand 2	D	730	732	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	500	501	first strand
Strand 2	D	704	705	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	646	648	first strand
Strand 2	D	700	702	parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	34	38	first strand
Strand 2	E	57	61	anti-parallel
Strand 3	E	67	68	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	37	38	first strand
Strand 2	F	57	58	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	65	67	first strand
Strand 2	F	77	79	anti-parallel

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There are 5 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	77	79	first strand
Strand 2	G	65	68	anti-parallel
Strand 3	G	57	61	anti-parallel
Strand 4	G	34	38	anti-parallel
Strand 5	G	174	176	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	36	38	first strand
Strand 2	H	57	59	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	65	67	first strand
Strand 2	H	77	79	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8PIV

Analysis of interatomic Contacts of Structural Units in PDB entry:
8PIV