Analysis of interatomic Contacts of Structural Units in PDB entry:
8PJ0

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8PJ0 entry

There are 4 chains in PDB entry 8PJ0 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 2	ALA 413
B	SER 2	ALA 413
C	SER 2	ALA 413
D	SER 2	MET 105

There are 80 helices in PDB entry 8PJ0. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	20	31	Right-handed alpha
Helix 2	AA2	A	58	62	Right-handed 310
Helix 3	AA3	A	64	69	Right-handed alpha
Helix 4	AA4	A	72	90	Right-handed alpha
Helix 5	AA5	A	97	99	Right-handed 310
Helix 6	AA6	A	111	126	Right-handed alpha
Helix 7	AA7	A	127	130	Right-handed 310
Helix 8	AA8	A	141	152	Right-handed alpha
Helix 9	AA9	A	162	164	Right-handed 310
Helix 10	AB1	A	165	180	Right-handed alpha
Helix 11	AB2	A	196	206	Right-handed alpha
Helix 12	AB3	A	215	219	Right-handed 310
Helix 13	AB4	A	244	250	Right-handed alpha
Helix 14	AB5	A	277	292	Right-handed alpha
Helix 15	AB6	A	294	298	Right-handed 310
Helix 16	AB7	A	308	324	Right-handed alpha
Helix 17	AB8	A	325	329	Right-handed 310
Helix 18	AB9	A	335	340	Right-handed alpha
Helix 19	AC1	A	342	344	Right-handed 310
Helix 20	AC2	A	345	361	Right-handed alpha
Helix 21	AC3	B	20	31	Right-handed alpha
Helix 22	AC4	B	58	62	Right-handed 310
Helix 23	AC5	B	64	69	Right-handed alpha
Helix 24	AC6	B	72	90	Right-handed alpha
Helix 25	AC7	B	97	99	Right-handed 310
Helix 26	AC8	B	111	126	Right-handed alpha
Helix 27	AC9	B	127	130	Right-handed 310
Helix 28	AD1	B	141	152	Right-handed alpha
Helix 29	AD2	B	162	164	Right-handed 310
Helix 30	AD3	B	165	180	Right-handed alpha
Helix 31	AD4	B	196	206	Right-handed alpha
Helix 32	AD5	B	215	219	Right-handed 310
Helix 33	AD6	B	244	250	Right-handed alpha
Helix 34	AD7	B	277	292	Right-handed alpha
Helix 35	AD8	B	294	298	Right-handed 310
Helix 36	AD9	B	308	324	Right-handed alpha
Helix 37	AE1	B	325	329	Right-handed 310
Helix 38	AE2	B	335	340	Right-handed alpha
Helix 39	AE3	B	342	344	Right-handed 310
Helix 40	AE4	B	345	361	Right-handed alpha
Helix 41	AE5	C	20	31	Right-handed alpha
Helix 42	AE6	C	58	62	Right-handed 310
Helix 43	AE7	C	64	69	Right-handed alpha
Helix 44	AE8	C	72	90	Right-handed alpha
Helix 45	AE9	C	97	99	Right-handed 310
Helix 46	AF1	C	111	126	Right-handed alpha
Helix 47	AF2	C	127	130	Right-handed 310
Helix 48	AF3	C	141	152	Right-handed alpha
Helix 49	AF4	C	162	164	Right-handed 310
Helix 50	AF5	C	165	180	Right-handed alpha
Helix 51	AF6	C	196	206	Right-handed alpha
Helix 52	AF7	C	215	219	Right-handed 310
Helix 53	AF8	C	244	250	Right-handed alpha
Helix 54	AF9	C	277	292	Right-handed alpha
Helix 55	AG1	C	294	298	Right-handed 310
Helix 56	AG2	C	308	324	Right-handed alpha
Helix 57	AG3	C	325	329	Right-handed 310
Helix 58	AG4	C	335	340	Right-handed alpha
Helix 59	AG5	C	342	344	Right-handed 310
Helix 60	AG6	C	345	361	Right-handed alpha
Helix 61	AG7	D	20	31	Right-handed alpha
Helix 62	AG8	D	58	62	Right-handed 310
Helix 63	AG9	D	64	69	Right-handed alpha
Helix 64	AH1	D	72	90	Right-handed alpha
Helix 65	AH2	D	97	99	Right-handed 310
Helix 66	AH3	D	111	126	Right-handed alpha
Helix 67	AH4	D	127	130	Right-handed 310
Helix 68	AH5	D	141	152	Right-handed alpha
Helix 69	AH6	D	162	164	Right-handed 310
Helix 70	AH7	D	165	180	Right-handed alpha
Helix 71	AH8	D	196	206	Right-handed alpha
Helix 72	AH9	D	215	219	Right-handed 310
Helix 73	AI1	D	244	250	Right-handed alpha
Helix 74	AI2	D	277	292	Right-handed alpha
Helix 75	AI3	D	294	298	Right-handed 310
Helix 76	AI4	D	308	324	Right-handed alpha
Helix 77	AI5	D	325	329	Right-handed 310
Helix 78	AI6	D	335	340	Right-handed alpha
Helix 79	AI7	D	342	344	Right-handed 310
Helix 80	AI8	D	345	361	Right-handed alpha

There are 12 sheets in PDB entry 8PJ0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	157	158	first strand
Strand 2	A	101	106	parallel
Strand 3	A	185	192	parallel
Strand 4	A	235	243	anti-parallel
Strand 5	A	6	14	anti-parallel
Strand 6	A	256	265	anti-parallel
Strand 7	A	403	410	anti-parallel
Strand 8	A	392	399	anti-parallel
Strand 9	A	300	302	parallel
Strand 10	A	331	333	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	35	37	first strand
Strand 2	A	50	52	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	362	363	first strand
Strand 2	A	386	387	anti-parallel

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There are 10 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	157	158	first strand
Strand 2	B	101	106	parallel
Strand 3	B	185	192	parallel
Strand 4	B	235	243	anti-parallel
Strand 5	B	6	14	anti-parallel
Strand 6	B	256	265	anti-parallel
Strand 7	B	403	410	anti-parallel
Strand 8	B	392	399	anti-parallel
Strand 9	B	300	302	parallel
Strand 10	B	331	333	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	35	37	first strand
Strand 2	B	50	52	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	362	363	first strand
Strand 2	B	386	387	anti-parallel

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There are 10 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	157	158	first strand
Strand 2	C	101	106	parallel
Strand 3	C	185	192	parallel
Strand 4	C	235	243	anti-parallel
Strand 5	C	6	14	anti-parallel
Strand 6	C	256	265	anti-parallel
Strand 7	C	403	410	anti-parallel
Strand 8	C	392	399	anti-parallel
Strand 9	C	300	302	parallel
Strand 10	C	331	333	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	36	37	first strand
Strand 2	C	50	51	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	362	363	first strand
Strand 2	C	386	387	anti-parallel

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There are 10 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	157	158	first strand
Strand 2	D	101	106	parallel
Strand 3	D	185	192	parallel
Strand 4	D	235	243	anti-parallel
Strand 5	D	6	14	anti-parallel
Strand 6	D	256	265	anti-parallel
Strand 7	D	403	410	anti-parallel
Strand 8	D	392	399	anti-parallel
Strand 9	D	300	302	parallel
Strand 10	D	331	333	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	36	37	first strand
Strand 2	D	50	51	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	362	363	first strand
Strand 2	D	386	387	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8PJ0

Analysis of interatomic Contacts of Structural Units in PDB entry:
8PJ0