Analysis of interatomic Contacts of Structural Units in PDB entry:
8PJ9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8PJ9 entry

There are 6 chains in PDB entry 8PJ9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 3LEU 1385
B
 C -20 U 15
C
 A 7 U 72
D
 T -9 T 3
E
 T 3 G 20
F
 T 0 A 9
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 46 helices in PDB entry 8PJ9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
59 94Right-handed alpha
Helix 2
AA2
A
96 103Right-handed alpha
Helix 3
AA3
A
121 132Right-handed alpha
Helix 4
AA4
A
134 145Right-handed alpha
Helix 5
AA5
A
150 164Right-handed alpha
Helix 6
AA6
A
315 343Right-handed alpha
Helix 7
AA7
A
343 353Right-handed alpha
Helix 8
AA8
A
358 365Right-handed alpha
Helix 9
AA9
A
368 383Right-handed alpha
Helix 10
AB1
A
386 395Right-handed alpha
Helix 11
AB2
A
404 408Right-handed 310
Helix 12
AB3
A
411 428Right-handed alpha
Helix 13
AB4
A
430 446Right-handed alpha
Helix 14
AB5
A
477 482Right-handed alpha
Helix 15
AB6
A
483 496Right-handed alpha
Helix 16
AB7
A
512 526Right-handed alpha
Helix 17
AB8
A
541 552Right-handed alpha
Helix 18
AB9
A
560 572Right-handed alpha
Helix 19
AC1
A
590 601Right-handed alpha
Helix 20
AC2
A
602 608Right-handed alpha
Helix 21
AC3
A
611 625Right-handed alpha
Helix 22
AC4
A
627 636Right-handed alpha
Helix 23
AC5
A
637 640Right-handed 310
Helix 24
AC6
A
643 653Right-handed alpha
Helix 25
AC7
A
662 667Right-handed alpha
Helix 26
AC8
A
677 684Right-handed alpha
Helix 27
AC9
A
691 698Right-handed alpha
Helix 28
AD1
A
702 714Right-handed alpha
Helix 29
AD2
A
720 728Right-handed alpha
Helix 30
AD3
A
731 752Right-handed alpha
Helix 31
AD4
A
936 947Right-handed alpha
Helix 32
AD5
A
967 978Right-handed alpha
Helix 33
AD6
A
988 1008Right-handed alpha
Helix 34
AD7
A
1011 1016Right-handed alpha
Helix 35
AD8
A
1041 1046Right-handed 310
Helix 36
AD9
A
1077 1087Right-handed alpha
Helix 37
AE1
A
1138 1143Right-handed alpha
Helix 38
AE2
A
1181 1188Right-handed alpha
Helix 39
AE3
A
1188 1196Right-handed alpha
Helix 40
AE4
A
1245 1257Right-handed alpha
Helix 41
AE5
A
1263 1273Right-handed alpha
Helix 42
AE6
A
1275 1291Right-handed alpha
Helix 43
AE7
A
1295 1306Right-handed alpha
Helix 44
AE8
A
1307 1309Right-handed 310
Helix 45
AE9
A
1312 1321Right-handed alpha
Helix 46
AF1
A
1330 1334Right-handed 310
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There are 7 sheets in PDB entry 8PJ9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
961 964first strand
Strand 2
A
759 762parallel
Strand 3
A
6 11parallel
Strand 4
A
15 21anti-parallel
Strand 5
A
48 52anti-parallel
Strand 6
A
1093 1096parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
42 46first strand
Strand 2
A
29 35anti-parallel
Strand 3
A
1377 1381parallel
Strand 4
A
1365 1370anti-parallel
Strand 5
A
1211 1215anti-parallel
Strand 6
A
1220 1226anti-parallel
Strand 7
A
1234 1236anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
537 539first strand
Strand 2
A
528 530anti-parallel
Strand 3
A
578 580anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1104 1106first strand
Strand 2
A
1109 1111anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1131 1132first strand
Strand 2
A
1144 1145anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1171 1178first strand
Strand 2
A
1150 1159anti-parallel
Strand 3
A
1200 1207anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1343 1345first strand
Strand 2
A
1348 1350anti-parallel
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