Analysis of interatomic Contacts of Structural Units in PDB entry:
8PJB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8PJB entry

There are 2 chains in PDB entry 8PJB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 145ARG 1158
C
 C 2 U 10
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 45 helices in PDB entry 8PJB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
146 154Right-handed alpha
Helix 2
AA2
A
166 181Right-handed alpha
Helix 3
AA3
A
223 242Right-handed alpha
Helix 4
AA4
A
268 282Right-handed alpha
Helix 5
AA5
A
352 371Right-handed alpha
Helix 6
AA6
A
371 382Right-handed alpha
Helix 7
AA7
A
384 400Right-handed alpha
Helix 8
AA8
A
413 428Right-handed alpha
Helix 9
AA9
A
430 433Right-handed 310
Helix 10
AB1
A
442 457Right-handed alpha
Helix 11
AB2
A
487 494Right-handed alpha
Helix 12
AB3
A
495 497Right-handed 310
Helix 13
AB4
A
509 512Right-handed 310
Helix 14
AB5
A
513 530Right-handed alpha
Helix 15
AB6
A
543 551Right-handed alpha
Helix 16
AB7
A
570 579Right-handed alpha
Helix 17
AB8
A
583 590Right-handed alpha
Helix 18
AB9
A
610 614Right-handed 310
Helix 19
AC1
A
620 630Right-handed alpha
Helix 20
AC2
A
636 651Right-handed alpha
Helix 21
AC3
A
662 676Right-handed alpha
Helix 22
AC4
A
695 701Right-handed alpha
Helix 23
AC5
A
718 721Right-handed 310
Helix 24
AC6
A
758 768Right-handed alpha
Helix 25
AC7
A
782 789Right-handed alpha
Helix 26
AC8
A
795 799Right-handed 310
Helix 27
AC9
A
802 813Right-handed alpha
Helix 28
AD1
A
816 823Right-handed alpha
Helix 29
AD2
A
829 843Right-handed alpha
Helix 30
AD3
A
853 862Right-handed alpha
Helix 31
AD4
A
865 878Right-handed alpha
Helix 32
AD5
A
880 890Right-handed alpha
Helix 33
AD6
A
910 915Right-handed alpha
Helix 34
AD7
A
916 919Right-handed 310
Helix 35
AD8
A
920 939Right-handed alpha
Helix 36
AD9
A
939 951Right-handed alpha
Helix 37
AE1
A
953 975Right-handed alpha
Helix 38
AE2
A
977 982Right-handed 310
Helix 39
AE3
A
994 1008Right-handed alpha
Helix 40
AE4
A
1070 1078Right-handed alpha
Helix 41
AE5
A
1086 1088Right-handed 310
Helix 42
AE6
A
1101 1110Right-handed alpha
Helix 43
AE7
A
1110 1125Right-handed alpha
Helix 44
AE8
A
1126 1129Right-handed 310
Helix 45
AE9
A
1133 1147Right-handed alpha
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There are 7 sheets in PDB entry 8PJB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
200 202first strand
Strand 2
A
219 221anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
263 264first strand
Strand 2
A
1096 1099parallel
Strand 3
A
1090 1092anti-parallel
Strand 4
A
1082 1084anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
328 329first strand
Strand 2
A
498 499parallel
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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
472 474first strand
Strand 2
A
465 469anti-parallel
Strand 3
A
481 486parallel
Strand 4
A
435 440parallel
Strand 5
A
503 507parallel
Strand 6
A
534 539parallel
Strand 7
A
402 407parallel
Strand 8
A
556 559parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
567 569first strand
Strand 2
A
776 779parallel
Strand 3
A
729 734parallel
Strand 4
A
655 659parallel
Strand 5
A
711 716parallel
Strand 6
A
685 690parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
737 744first strand
Strand 2
A
749 756anti-parallel
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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1054 1056first strand
Strand 2
A
1062 1064anti-parallel
Strand 3
A
1027 1031parallel
Strand 4
A
1020 1023anti-parallel
Strand 5
A
1012 1017anti-parallel
Strand 6
A
1049 1051anti-parallel
Strand 7
A
1067 1068anti-parallel
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