Analysis of interatomic Contacts of Structural Units in PDB entry:
8PJN


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8PJN entry


Note, this PDB entry contains modified residue(s) PHOSPHOSERINE (SEP) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 8 chains in PDB entry 8PJN (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
b
 MET 1PHE 391
2
 GLY 7THR 150
2
 GLU 167GLU 167
2
 MET 170MET 170
2
 ASP 172PHE 173
2
 GLU 175GLU 175
i
 ALA 2MET 396
u
 MET 1GLY 76
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 33 helices in PDB entry 8PJN. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
b
2 40Right-handed alpha
Helix 2
2
b
58 81Right-handed alpha
Helix 3
3
b
83 96Right-handed alpha
Helix 4
4
b
114 128Right-handed alpha
Helix 5
5
b
132 140Right-handed alpha
Helix 6
6
b
149 163Right-handed alpha
Helix 7
7
b
262 273Right-handed alpha
Helix 8
8
b
281 305Right-handed alpha
Helix 9
9
b
360 365Right-handed alpha
Helix 10
1
2
8 20Right-handed alpha
Helix 11
2
2
90 95Right-handed 310
Helix 12
3
2
101 114Right-handed alpha
Helix 13
4
2
124 132Right-handed alpha
Helix 14
5
2
134 148Right-handed alpha
Helix 15
1
i
7 17Right-handed alpha
Helix 16
2
i
19 59Right-handed alpha
Helix 17
3
i
64 109Right-handed alpha
Helix 18
4
i
116 136Right-handed alpha
Helix 19
5
i
139 149Right-handed alpha
Helix 20
6
i
157 171Right-handed alpha
Helix 21
7
i
176 184Right-handed alpha
Helix 22
8
i
186 191Right-handed alpha
Helix 23
9
i
196 210Right-handed alpha
Helix 24
10
i
214 224Right-handed alpha
Helix 25
11
i
231 244Right-handed alpha
Helix 26
12
i
254 258Right-handed alpha
Helix 27
13
i
262 277Right-handed alpha
Helix 28
14
i
285 297Right-handed alpha
Helix 29
15
i
300 303Right-handed alpha
Helix 30
16
i
319 324Right-handed alpha
Helix 31
17
i
364 370Right-handed alpha
Helix 32
1
u
23 34Right-handed alpha
Helix 33
2
u
56 60Right-handed alpha
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There are 4 sheets in PDB entry 8PJN. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
2
24 27first strand
Strand 2
2
33 40anti-parallel
Strand 3
2
49 56anti-parallel
Strand 4
2
67 70anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
i
391 394first strand
Strand 2
i
353 355anti-parallel
Strand 3
i
359 362anti-parallel
Strand 4
b
388 391parallel
Strand 5
b
349 351anti-parallel
Strand 6
b
357 359anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
b
370 373first strand
Strand 2
b
379 382anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
u
12 16first strand
Strand 2
u
2 7anti-parallel
Strand 3
u
66 71parallel
Strand 4
u
41 44anti-parallel
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