Analysis of interatomic Contacts of Structural Units in PDB entry:
8PK2


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8PK2 entry

There are 5 chains in PDB entry 8PK2 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 13LEU 100
B
 GLU 13LEU 100
C
 GLU 13LEU 100
D
 GLU 13LEU 100
E
 GLU 13LEU 100
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are no helices in PDB entry 8PK2

There are 7 sheets in PDB entry 8PK2. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
15 18first strand
Strand 2
B
15 19parallel
Strand 3
C
15 19parallel
Strand 4
D
15 19parallel
Strand 5
E
15 19parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
48 50first strand
Strand 2
B
48 50parallel
Strand 3
C
48 50parallel
Strand 4
D
48 50parallel
Strand 5
E
48 50parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
54 63first strand
Strand 2
B
54 63parallel
Strand 3
C
54 63parallel
Strand 4
D
54 63parallel
Strand 5
E
54 63parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
69 71first strand
Strand 2
B
69 71parallel
Strand 3
C
69 71parallel
Strand 4
D
69 71parallel
Strand 5
E
69 71parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
75 83first strand
Strand 2
B
75 83parallel
Strand 3
C
75 83parallel
Strand 4
D
75 83parallel
Strand 5
E
75 83parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
88 89first strand
Strand 2
B
88 89parallel
Strand 3
C
88 89parallel
Strand 4
D
88 89parallel
Strand 5
E
88 89parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
92 96first strand
Strand 2
B
92 96parallel
Strand 3
C
92 96parallel
Strand 4
D
92 96parallel
Strand 5
E
92 96parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il