Analysis of interatomic Contacts of Structural Units in PDB entry:
8PK4


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8PK4 entry

There are 10 chains in PDB entry 8PK4 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 2LYS 96
B
 ASP 2LYS 96
C
 ASP 2LYS 96
D
 ASP 2LYS 96
E
 ASP 2LYS 96
F
 ASP 2LYS 96
G
 ASP 2LYS 96
H
 ASP 2LYS 96
I
 ASP 2LYS 96
J
 ASP 2LYS 96
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are no helices in PDB entry 8PK4

There are 20 sheets in PDB entry 8PK4. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2 3first strand
Strand 2
C
2 3parallel
Strand 3
E
2 3parallel
Strand 4
G
2 3parallel
Strand 5
I
2 3parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
12 18first strand
Strand 2
C
12 18parallel
Strand 3
E
12 18parallel
Strand 4
G
12 18parallel
Strand 5
I
12 18parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
23 29first strand
Strand 2
C
23 29parallel
Strand 3
E
23 29parallel
Strand 4
G
23 29parallel
Strand 5
I
23 29parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
32 40first strand
Strand 2
C
32 40parallel
Strand 3
E
32 40parallel
Strand 4
G
32 40parallel
Strand 5
I
32 40parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
43 46first strand
Strand 2
C
43 46parallel
Strand 3
E
43 46parallel
Strand 4
G
43 46parallel
Strand 5
I
43 46parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
49 50first strand
Strand 2
C
49 50parallel
Strand 3
E
49 50parallel
Strand 4
G
49 50parallel
Strand 5
I
49 50parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
63 67first strand
Strand 2
C
63 67parallel
Strand 3
E
63 67parallel
Strand 4
G
63 67parallel
Strand 5
I
63 67parallel
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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
70 71first strand
Strand 2
C
70 71parallel
Strand 3
E
70 71parallel
Strand 4
G
70 71parallel
Strand 5
I
70 71parallel
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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
77 82first strand
Strand 2
C
77 82parallel
Strand 3
E
77 82parallel
Strand 4
G
77 82parallel
Strand 5
I
77 82parallel
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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
87 93first strand
Strand 2
C
87 93parallel
Strand 3
E
87 93parallel
Strand 4
G
87 93parallel
Strand 5
I
87 93parallel
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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
2 3first strand
Strand 2
D
2 3parallel
Strand 3
F
2 3parallel
Strand 4
H
2 3parallel
Strand 5
J
2 3parallel
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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
12 18first strand
Strand 2
D
12 18parallel
Strand 3
F
12 18parallel
Strand 4
H
12 18parallel
Strand 5
J
12 18parallel
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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
23 29first strand
Strand 2
D
23 29parallel
Strand 3
F
23 29parallel
Strand 4
H
23 29parallel
Strand 5
J
23 29parallel
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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
32 40first strand
Strand 2
D
32 40parallel
Strand 3
F
32 40parallel
Strand 4
H
32 40parallel
Strand 5
J
32 40parallel
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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
43 46first strand
Strand 2
D
43 46parallel
Strand 3
F
43 46parallel
Strand 4
H
43 46parallel
Strand 5
J
43 46parallel
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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
49 50first strand
Strand 2
D
49 50parallel
Strand 3
F
49 50parallel
Strand 4
H
49 50parallel
Strand 5
J
49 50parallel
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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
63 67first strand
Strand 2
D
63 67parallel
Strand 3
F
63 67parallel
Strand 4
H
63 67parallel
Strand 5
J
63 67parallel
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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
70 71first strand
Strand 2
D
70 71parallel
Strand 3
F
70 71parallel
Strand 4
H
70 71parallel
Strand 5
J
70 71parallel
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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
77 82first strand
Strand 2
D
77 82parallel
Strand 3
F
77 82parallel
Strand 4
H
77 82parallel
Strand 5
J
77 82parallel
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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
87 93first strand
Strand 2
D
87 93parallel
Strand 3
F
87 93parallel
Strand 4
H
87 93parallel
Strand 5
J
87 93parallel
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