Analysis of interatomic Contacts of Structural Units in PDB entry:
8PK5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8PK5 entry

There are 2 chains in PDB entry 8PK5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU -1PRO 564
B
 PRO 2ALA 537
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 26 helices in PDB entry 8PK5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
51 69Right-handed alpha
Helix 2
AA2
A
98 108Right-handed alpha
Helix 3
AA3
A
123 132Right-handed alpha
Helix 4
AA4
A
138 147Right-handed alpha
Helix 5
AA5
A
169 191Right-handed alpha
Helix 6
AA6
A
241 255Right-handed alpha
Helix 7
AA7
A
345 355Right-handed alpha
Helix 8
AA8
A
415 424Right-handed alpha
Helix 9
AA9
A
444 455Right-handed alpha
Helix 10
AB1
A
475 481Right-handed alpha
Helix 11
AB2
A
488 507Right-handed alpha
Helix 12
AB3
A
525 541Right-handed alpha
Helix 13
AB4
A
548 560Right-handed alpha
Helix 14
AB5
B
27 45Right-handed alpha
Helix 15
AB6
B
70 78Right-handed alpha
Helix 16
AB7
B
91 103Right-handed alpha
Helix 17
AB8
B
160 164Right-handed alpha
Helix 18
AB9
B
168 178Right-handed alpha
Helix 19
AC1
B
194 208Right-handed alpha
Helix 20
AC2
B
259 262Right-handed alpha
Helix 21
AC3
B
299 304Right-handed alpha
Helix 22
AC4
B
309 320Right-handed alpha
Helix 23
AC5
B
409 424Right-handed alpha
Helix 24
AC6
B
430 447Right-handed alpha
Helix 25
AC7
B
450 466Right-handed alpha
Helix 26
AC8
B
474 490Right-handed alpha
Back to top of page

There are 6 sheets in PDB entry 8PK5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
85 87first strand
Strand 2
A
75 81anti-parallel
Strand 3
A
9 15parallel
Strand 4
A
157 164parallel
Strand 5
A
201 210parallel
Strand 6
A
230 238parallel
Strand 7
A
221 225anti-parallel
Back to list of sheets
Back to top of page

There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
531 533first strand
Strand 2
A
257 269anti-parallel
Strand 3
A
313 318parallel
Strand 4
A
359 363anti-parallel
Strand 5
A
373 380anti-parallel
Strand 6
A
383 389anti-parallel
Strand 7
A
331 339anti-parallel
Strand 8
A
277 286anti-parallel
Strand 9
A
257 269anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
427 429first strand
Strand 2
B
369 371anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
435 436first strand
Strand 2
A
441 442anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
60 67first strand
Strand 2
B
51 56anti-parallel
Strand 3
B
3 8parallel
Strand 4
B
109 115parallel
Strand 5
B
150 159parallel
Strand 6
B
183 188parallel
Back to list of sheets
Back to top of page

There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
213 218first strand
Strand 2
B
221 228anti-parallel
Strand 3
B
269 275anti-parallel
Strand 4
B
348 352anti-parallel
Strand 5
B
332 338anti-parallel
Strand 6
B
322 329anti-parallel
Strand 7
B
250 258anti-parallel
Strand 8
B
213 218parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il