Analysis of interatomic Contacts of Structural Units in PDB entry:
8PK6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8PK6 entry

There are 6 chains in PDB entry 8PK6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU -1ASP 236
B
 GLU 93GLN 115
C
 MET 1ASP 236
D
 ARG 95GLN 115
E
 MET 1ASP 236
F
 GLU 93THR 117
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 8PK6. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
31 49Right-handed alpha
Helix 2
AA2
A
78 87Right-handed alpha
Helix 3
AA3
A
103 114Right-handed alpha
Helix 4
AA4
A
118 126Right-handed alpha
Helix 5
AA5
A
149 172Right-handed alpha
Helix 6
AA6
A
222 233Right-handed alpha
Helix 7
AA7
B
96 114Right-handed alpha
Helix 8
AA8
C
31 49Right-handed alpha
Helix 9
AA9
C
78 88Right-handed alpha
Helix 10
AB1
C
103 114Right-handed alpha
Helix 11
AB2
C
118 127Right-handed alpha
Helix 12
AB3
C
149 166Right-handed alpha
Helix 13
AB4
C
221 234Right-handed alpha
Helix 14
AB5
D
98 113Right-handed alpha
Helix 15
AB6
E
31 49Right-handed alpha
Helix 16
AB7
E
78 88Right-handed alpha
Helix 17
AB8
E
103 114Right-handed alpha
Helix 18
AB9
E
118 126Right-handed alpha
Helix 19
AC1
E
149 170Right-handed alpha
Helix 20
AC2
E
221 234Right-handed alpha
Helix 21
AC3
F
95 115Right-handed alpha
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There are 3 sheets in PDB entry 8PK6. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
65 67first strand
Strand 2
A
55 61anti-parallel
Strand 3
A
9 14parallel
Strand 4
A
138 144parallel
Strand 5
A
182 188parallel
Strand 6
A
213 214parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
66 67first strand
Strand 2
C
55 60anti-parallel
Strand 3
C
9 14parallel
Strand 4
C
138 144parallel
Strand 5
C
182 190parallel
Strand 6
C
210 218parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
66 67first strand
Strand 2
E
55 60anti-parallel
Strand 3
E
9 14parallel
Strand 4
E
138 143parallel
Strand 5
E
182 189parallel
Strand 6
E
210 217parallel
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