Analysis of interatomic Contacts of Structural Units in PDB entry:
8PKF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8PKF entry

There are 6 chains in PDB entry 8PKF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 11THR 123
B
 PRO 11THR 123
C
 PRO 11THR 123
D
 PRO 11THR 123
E
 PRO 11THR 123
F
 PRO 11THR 123
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are no helices in PDB entry 8PKF

There are 10 sheets in PDB entry 8PKF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
12 16first strand
Strand 2
B
12 16parallel
Strand 3
C
12 16parallel
Strand 4
D
12 16parallel
Strand 5
E
12 16parallel
Strand 6
F
12 16parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
19 21first strand
Strand 2
B
19 21parallel
Strand 3
C
19 21parallel
Strand 4
D
19 21parallel
Strand 5
E
19 21parallel
Strand 6
F
19 21parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
29 34first strand
Strand 2
B
29 34parallel
Strand 3
C
29 34parallel
Strand 4
D
29 34parallel
Strand 5
E
29 34parallel
Strand 6
F
29 34parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
59 62first strand
Strand 2
B
59 62parallel
Strand 3
C
59 62parallel
Strand 4
D
59 62parallel
Strand 5
E
59 62parallel
Strand 6
F
59 62parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
65 66first strand
Strand 2
B
65 66parallel
Strand 3
C
65 66parallel
Strand 4
D
65 66parallel
Strand 5
E
65 66parallel
Strand 6
F
65 66parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
71 80first strand
Strand 2
B
71 80parallel
Strand 3
C
71 80parallel
Strand 4
D
71 80parallel
Strand 5
E
71 80parallel
Strand 6
F
71 80parallel
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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
92 99first strand
Strand 2
B
92 99parallel
Strand 3
C
92 99parallel
Strand 4
D
92 99parallel
Strand 5
E
92 99parallel
Strand 6
F
92 99parallel
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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
104 107first strand
Strand 2
B
104 107parallel
Strand 3
C
104 107parallel
Strand 4
D
104 107parallel
Strand 5
E
104 107parallel
Strand 6
F
104 107parallel
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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
114 115first strand
Strand 2
B
114 115parallel
Strand 3
C
114 115parallel
Strand 4
D
114 115parallel
Strand 5
E
114 115parallel
Strand 6
F
114 115parallel
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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
118 122first strand
Strand 2
B
118 122parallel
Strand 3
C
118 122parallel
Strand 4
D
118 122parallel
Strand 5
E
118 122parallel
Strand 6
F
118 122parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il