Analysis of interatomic Contacts of Structural Units in PDB entry:
8PKZ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8PKZ entry

There is 1 chain in PDB entry 8PKZ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 157LYS 302
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 8PKZ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
167 176Right-handed alpha
Helix 2
AA2
A
179 194Right-handed alpha
Helix 3
AA3
A
196 202Right-handed alpha
Helix 4
AA4
A
203 205Right-handed 310
Helix 5
AA5
A
207 219Right-handed alpha
Helix 6
AA6
A
233 238Right-handed alpha
Helix 7
AA7
A
241 249Right-handed alpha
Helix 8
AA8
A
266 268Right-handed 310
Helix 9
AA9
A
269 278Right-handed alpha
Helix 10
AB1
A
287 299Right-handed alpha
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There is 1 sheet (AA1) in PDB entry 8PKZ.

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
222 223first strand
Strand 2
A
281 285parallel
Strand 3
A
259 264parallel
Strand 4
A
250 256anti-parallel
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