Analysis of interatomic Contacts of Structural Units in PDB entry:
8PM3


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8PM3 entry

There are 4 chains in PDB entry 8PM3 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 47GLY 333
B
 GLU 47GLY 333
C
 GLU 47GLY 333
D
 GLU 47GLY 333
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 50 helices in PDB entry 8PM3. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
49 51Right-handed 310
Helix 2
AA2
A
90 106Right-handed alpha
Helix 3
AA3
A
136 146Right-handed alpha
Helix 4
AA4
A
151 174Right-handed alpha
Helix 5
AA5
A
181 183Right-handed 310
Helix 6
AA6
A
221 226Right-handed alpha
Helix 7
AA7
A
235 253Right-handed alpha
Helix 8
AA8
A
262 273Right-handed alpha
Helix 9
AA9
A
284 295Right-handed alpha
Helix 10
AB1
A
298 302Right-handed 310
Helix 11
AB2
A
304 309Right-handed alpha
Helix 12
AB3
A
311 320Right-handed alpha
Helix 13
AB4
A
323 333Right-handed alpha
Helix 14
AB5
B
49 51Right-handed 310
Helix 15
AB6
B
90 106Right-handed alpha
Helix 16
AB7
B
136 146Right-handed alpha
Helix 17
AB8
B
151 174Right-handed alpha
Helix 18
AB9
B
181 183Right-handed 310
Helix 19
AC1
B
221 226Right-handed alpha
Helix 20
AC2
B
235 253Right-handed alpha
Helix 21
AC3
B
262 273Right-handed alpha
Helix 22
AC4
B
284 295Right-handed alpha
Helix 23
AC5
B
298 302Right-handed 310
Helix 24
AC6
B
304 309Right-handed alpha
Helix 25
AC7
B
311 320Right-handed alpha
Helix 26
AC8
B
323 333Right-handed alpha
Helix 27
AC9
C
49 51Right-handed 310
Helix 28
AD1
C
90 106Right-handed alpha
Helix 29
AD2
C
136 146Right-handed alpha
Helix 30
AD3
C
151 174Right-handed alpha
Helix 31
AD4
C
181 183Right-handed 310
Helix 32
AD5
C
221 226Right-handed alpha
Helix 33
AD6
C
235 253Right-handed alpha
Helix 34
AD7
C
262 273Right-handed alpha
Helix 35
AD8
C
284 295Right-handed alpha
Helix 36
AD9
C
304 309Right-handed alpha
Helix 37
AE1
C
311 320Right-handed alpha
Helix 38
AE2
C
323 333Right-handed alpha
Helix 39
AE3
D
49 51Right-handed 310
Helix 40
AE4
D
90 106Right-handed alpha
Helix 41
AE5
D
136 146Right-handed alpha
Helix 42
AE6
D
151 174Right-handed alpha
Helix 43
AE7
D
181 183Right-handed 310
Helix 44
AE8
D
221 226Right-handed alpha
Helix 45
AE9
D
235 253Right-handed alpha
Helix 46
AF1
D
262 273Right-handed alpha
Helix 47
AF2
D
284 295Right-handed alpha
Helix 48
AF3
D
304 309Right-handed alpha
Helix 49
AF4
D
311 320Right-handed alpha
Helix 50
AF5
D
323 333Right-handed alpha
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There are 8 sheets in PDB entry 8PM3. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
53 62first strand
Strand 2
A
65 72anti-parallel
Strand 3
A
78 84anti-parallel
Strand 4
A
124 129anti-parallel
Strand 5
A
115 121anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
134 135first strand
Strand 2
A
185 187anti-parallel
Strand 3
A
193 195anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
53 62first strand
Strand 2
B
65 72anti-parallel
Strand 3
B
78 84anti-parallel
Strand 4
B
125 129anti-parallel
Strand 5
B
115 120anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
134 135first strand
Strand 2
B
185 187anti-parallel
Strand 3
B
193 195anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
53 62first strand
Strand 2
C
65 72anti-parallel
Strand 3
C
78 84anti-parallel
Strand 4
C
124 129anti-parallel
Strand 5
C
115 121anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
134 135first strand
Strand 2
C
185 187anti-parallel
Strand 3
C
193 195anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
53 62first strand
Strand 2
D
65 72anti-parallel
Strand 3
D
78 84anti-parallel
Strand 4
D
125 129anti-parallel
Strand 5
D
115 120anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
134 135first strand
Strand 2
D
185 187anti-parallel
Strand 3
D
193 195anti-parallel
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