Analysis of interatomic Contacts of Structural Units in PDB entry:
8PM4


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8PM4 entry

There are 4 chains in PDB entry 8PM4 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ALA 604
B
 C -31 G 20
C
 C -19 C 7
D
 G -7 A 9
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 8PM4. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
18 53Right-handed alpha
Helix 2
AA2
A
53 84Right-handed alpha
Helix 3
AA3
A
91 119Right-handed alpha
Helix 4
AA4
A
122 145Right-handed alpha
Helix 5
AA5
A
151 175Right-handed alpha
Helix 6
AA6
A
206 212Right-handed alpha
Helix 7
AA7
A
228 235Right-handed alpha
Helix 8
AA8
A
236 244Right-handed alpha
Helix 9
AA9
A
346 350Right-handed 310
Helix 10
AB1
A
368 404Right-handed alpha
Helix 11
AB2
A
416 422Right-handed alpha
Helix 12
AB3
A
425 439Right-handed alpha
Helix 13
AB4
A
444 491Right-handed alpha
Helix 14
AB5
A
500 507Right-handed alpha
Helix 15
AB6
A
508 511Right-handed 310
Helix 16
AB7
A
514 529Right-handed alpha
Helix 17
AB8
A
529 544Right-handed alpha
Helix 18
AB9
A
588 604Right-handed alpha
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There are 3 sheets in PDB entry 8PM4. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
190 195first strand
Strand 2
A
282 293anti-parallel
Strand 3
A
296 307anti-parallel
Strand 4
A
3 11anti-parallel
Strand 5
A
262 272anti-parallel
Strand 6
A
245 256anti-parallel
Strand 7
A
222 223anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
353 355first strand
Strand 2
A
362 366anti-parallel
Strand 3
A
333 339anti-parallel
Strand 4
A
318 326anti-parallel
Strand 5
A
493 497parallel
Strand 6
A
548 551parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
578 579first strand
Strand 2
A
586 587anti-parallel
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