Analysis of interatomic Contacts of Structural Units in PDB entry:
8PM5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8PM5 entry

There are 14 chains in PDB entry 8PM5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 232ALA 292
B
 C 1 T 12
C
 A 13 G 24
D
 PRO 232THR 291
E
 C 1 T 12
F
 A 13 G 24
G
 LYS 231ALA 292
H
 C 1 T 12
I
 A 13 G 24
J
 ARG 233THR 291
K
 C 1 T 12
L
 A 13 G 24
M
 PHE 239ARG 289
N
 GLN 11LYS 18
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 8PM5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
240 254Right-handed alpha
Helix 2
AA2
A
258 270Right-handed alpha
Helix 3
AA3
A
272 292Right-handed alpha
Helix 4
AA4
D
240 254Right-handed alpha
Helix 5
AA5
D
258 270Right-handed alpha
Helix 6
AA6
D
272 288Right-handed alpha
Helix 7
AA7
G
240 254Right-handed alpha
Helix 8
AA8
G
258 270Right-handed alpha
Helix 9
AA9
G
272 292Right-handed alpha
Helix 10
AB1
J
240 254Right-handed alpha
Helix 11
AB2
J
258 270Right-handed alpha
Helix 12
AB3
J
272 291Right-handed alpha
Helix 13
AB4
M
240 254Right-handed alpha
Helix 14
AB5
M
258 270Right-handed alpha
Helix 15
AB6
M
272 289Right-handed alpha
Helix 16
AB7
N
12 17Right-handed alpha
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There are no sheets in PDB entry 8PM5
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il