Analysis of interatomic Contacts of Structural Units in PDB entry:
8PM6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8PM6 entry

There is 1 chain in PDB entry 8PM6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 45THR 1315
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 33 helices in PDB entry 8PM6. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
55 101Right-handed alpha
Helix 2
AA2
A
133 183Right-handed alpha
Helix 3
AA3
A
199 214Right-handed alpha
Helix 4
AA4
A
215 238Right-handed alpha
Helix 5
AA5
A
240 287Right-handed alpha
Helix 6
AA6
A
287 294Right-handed alpha
Helix 7
AA7
A
296 350Right-handed alpha
Helix 8
AA8
A
355 376Right-handed alpha
Helix 9
AA9
A
376 394Right-handed alpha
Helix 10
AB1
A
741 748Right-handed alpha
Helix 11
AB2
A
751 766Right-handed alpha
Helix 12
AB3
A
767 782Right-handed alpha
Helix 13
AB4
A
783 785Right-handed 310
Helix 14
AB5
A
787 842Right-handed alpha
Helix 15
AB6
A
843 848Right-handed 310
Helix 16
AB7
A
853 895Right-handed alpha
Helix 17
AB8
A
897 917Right-handed alpha
Helix 18
AB9
A
917 923Right-handed alpha
Helix 19
AC1
A
958 963Right-handed alpha
Helix 20
AC2
A
964 966Right-handed 310
Helix 21
AC3
A
967 1010Right-handed alpha
Helix 22
AC4
A
1013 1036Right-handed alpha
Helix 23
AC5
A
1037 1056Right-handed alpha
Helix 24
AC6
A
1120 1128Right-handed alpha
Helix 25
AC7
A
1143 1147Right-handed 310
Helix 26
AC8
A
1148 1155Right-handed alpha
Helix 27
AC9
A
1170 1174Right-handed 310
Helix 28
AD1
A
1188 1195Right-handed alpha
Helix 29
AD2
A
1197 1204Right-handed alpha
Helix 30
AD3
A
1220 1235Right-handed alpha
Helix 31
AD4
A
1250 1266Right-handed alpha
Helix 32
AD5
A
1301 1306Right-handed alpha
Helix 33
AD6
A
1309 1314Right-handed alpha
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There are 2 sheets in PDB entry 8PM6. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1080 1081first strand
Strand 2
A
1136 1137anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1108 1110first strand
Strand 2
A
1269 1272parallel
Strand 3
A
1239 1242parallel
Strand 4
A
1156 1159parallel
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