Analysis of interatomic Contacts of Structural Units in PDB entry:
8PMC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8PMC entry

There are 12 chains in PDB entry 8PMC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 C 1 C 12
I
 G 13 G 24
D
 C 1 C 12
J
 G 13 G 24
F
 C 1 C 12
K
 G 13 G 24
H
 C 1 C 12
L
 G 13 G 24
A
 LYS 231ALA 292
C
 LYS 231ARG 289
E
 PRO 232THR 291
G
 PRO 232THR 291
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 8PMC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
240 254Right-handed alpha
Helix 2
AA2
A
258 269Right-handed alpha
Helix 3
AA3
A
272 292Right-handed alpha
Helix 4
AA4
C
240 254Right-handed alpha
Helix 5
AA5
C
258 269Right-handed alpha
Helix 6
AA6
C
272 288Right-handed alpha
Helix 7
AA7
E
240 254Right-handed alpha
Helix 8
AA8
E
258 270Right-handed alpha
Helix 9
AA9
E
272 288Right-handed alpha
Helix 10
AB1
G
240 254Right-handed alpha
Helix 11
AB2
G
258 270Right-handed alpha
Helix 12
AB3
G
272 290Right-handed alpha
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There are no sheets in PDB entry 8PMC
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il