Analysis of interatomic Contacts of Structural Units in PDB entry:
8PMJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8PMJ entry

There is 1 chain in PDB entry 8PMJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 44GLY 1317
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 47 helices in PDB entry 8PMJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
46 52Right-handed 310
Helix 2
AA2
A
55 100Right-handed alpha
Helix 3
AA3
A
133 183Right-handed alpha
Helix 4
AA4
A
186 191Right-handed alpha
Helix 5
AA5
A
194 214Right-handed alpha
Helix 6
AA6
A
215 237Right-handed alpha
Helix 7
AA7
A
241 287Right-handed alpha
Helix 8
AA8
A
287 295Right-handed alpha
Helix 9
AA9
A
296 344Right-handed alpha
Helix 10
AB1
A
356 375Right-handed alpha
Helix 11
AB2
A
376 398Right-handed alpha
Helix 12
AB3
A
460 469Right-handed alpha
Helix 13
AB4
A
487 489Right-handed 310
Helix 14
AB5
A
490 497Right-handed alpha
Helix 15
AB6
A
511 518Right-handed alpha
Helix 16
AB7
A
524 535Right-handed alpha
Helix 17
AB8
A
537 543Right-handed alpha
Helix 18
AB9
A
553 557Right-handed 310
Helix 19
AC1
A
560 574Right-handed alpha
Helix 20
AC2
A
590 604Right-handed alpha
Helix 21
AC3
A
616 621Right-handed alpha
Helix 22
AC4
A
739 748Right-handed alpha
Helix 23
AC5
A
751 781Right-handed alpha
Helix 24
AC6
A
792 841Right-handed alpha
Helix 25
AC7
A
843 848Right-handed alpha
Helix 26
AC8
A
849 852Right-handed 310
Helix 27
AC9
A
853 873Right-handed alpha
Helix 28
AD1
A
874 895Right-handed alpha
Helix 29
AD2
A
897 908Right-handed alpha
Helix 30
AD3
A
908 946Right-handed alpha
Helix 31
AD4
A
946 954Right-handed alpha
Helix 32
AD5
A
955 1010Right-handed alpha
Helix 33
AD6
A
1013 1028Right-handed alpha
Helix 34
AD7
A
1029 1039Right-handed 310
Helix 35
AD8
A
1040 1056Right-handed alpha
Helix 36
AD9
A
1118 1127Right-handed alpha
Helix 37
AE1
A
1145 1147Right-handed 310
Helix 38
AE2
A
1148 1155Right-handed alpha
Helix 39
AE3
A
1169 1176Right-handed alpha
Helix 40
AE4
A
1184 1195Right-handed alpha
Helix 41
AE5
A
1197 1203Right-handed alpha
Helix 42
AE6
A
1213 1217Right-handed 310
Helix 43
AE7
A
1220 1235Right-handed alpha
Helix 44
AE8
A
1250 1265Right-handed alpha
Helix 45
AE9
A
1276 1280Right-handed 310
Helix 46
AF1
A
1299 1306Right-handed alpha
Helix 47
AF2
A
1308 1317Right-handed alpha
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There are 5 sheets in PDB entry 8PMJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
436 445first strand
Strand 2
A
420 428anti-parallel
Strand 3
A
476 481anti-parallel
Strand 4
A
484 485anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
498 501first strand
Strand 2
A
579 583parallel
Strand 3
A
609 613parallel
Strand 4
A
450 454parallel
Strand 5
A
625 630parallel
Strand 6
A
633 636anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1096 1097first strand
Strand 2
A
1078 1085anti-parallel
Strand 3
A
1101 1103anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1096 1097first strand
Strand 2
A
1078 1085anti-parallel
Strand 3
A
1134 1139anti-parallel
Strand 4
A
1142 1143anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1156 1159first strand
Strand 2
A
1239 1243parallel
Strand 3
A
1269 1273parallel
Strand 4
A
1108 1113parallel
Strand 5
A
1285 1290parallel
Strand 6
A
1293 1298anti-parallel
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