Analysis of interatomic Contacts of Structural Units in PDB entry:
8PMP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8PMP entry

There are 3 chains in PDB entry 8PMP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 25ALA 790
B
 GLY 4ASN 155
D
 GLY 851PHE 871
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 46 helices in PDB entry 8PMP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
25 38Right-handed alpha
Helix 2
AA2
A
45 60Right-handed alpha
Helix 3
AA3
A
61 63Right-handed 310
Helix 4
AA4
A
64 79Right-handed alpha
Helix 5
AA5
A
82 97Right-handed alpha
Helix 6
AA6
A
97 118Right-handed alpha
Helix 7
AA7
A
120 137Right-handed alpha
Helix 8
AA8
A
141 155Right-handed alpha
Helix 9
AA9
A
156 158Right-handed 310
Helix 10
AB1
A
162 204Right-handed alpha
Helix 11
AB2
A
210 215Right-handed alpha
Helix 12
AB3
A
227 242Right-handed alpha
Helix 13
AB4
A
251 255Right-handed 310
Helix 14
AB5
A
256 262Right-handed alpha
Helix 15
AB6
A
293 297Right-handed 310
Helix 16
AB7
A
308 325Right-handed alpha
Helix 17
AB8
A
328 338Right-handed alpha
Helix 18
AB9
A
346 361Right-handed alpha
Helix 19
AC1
A
368 383Right-handed alpha
Helix 20
AC2
A
386 401Right-handed alpha
Helix 21
AC3
A
406 424Right-handed alpha
Helix 22
AC4
A
429 433Right-handed 310
Helix 23
AC5
A
434 439Right-handed alpha
Helix 24
AC6
A
443 459Right-handed alpha
Helix 25
AC7
A
461 469Right-handed alpha
Helix 26
AC8
A
470 477Right-handed 310
Helix 27
AC9
A
497 510Right-handed alpha
Helix 28
AD1
A
513 523Right-handed alpha
Helix 29
AD2
A
540 555Right-handed alpha
Helix 30
AD3
A
558 569Right-handed alpha
Helix 31
AD4
A
569 577Right-handed alpha
Helix 32
AD5
A
579 594Right-handed alpha
Helix 33
AD6
A
597 611Right-handed alpha
Helix 34
AD7
A
615 622Right-handed alpha
Helix 35
AD8
A
628 632Right-handed 310
Helix 36
AD9
A
634 676Right-handed alpha
Helix 37
AE1
A
687 732Right-handed alpha
Helix 38
AE2
A
737 769Right-handed alpha
Helix 39
AE3
A
775 789Right-handed alpha
Helix 40
AE4
B
6 11Right-handed alpha
Helix 41
AE5
B
28 39Right-handed alpha
Helix 42
AE6
B
52 63Right-handed alpha
Helix 43
AE7
B
90 101Right-handed alpha
Helix 44
AE8
B
133 139Right-handed alpha
Helix 45
AE9
B
143 147Right-handed 310
Helix 46
AF1
B
150 155Right-handed alpha
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There are 2 sheets in PDB entry 8PMP. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
66 73first strand
Strand 2
B
80 88anti-parallel
Strand 3
B
41 45anti-parallel
Strand 4
B
112 116anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
105 106first strand
Strand 2
B
109 110anti-parallel
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