Analysis of interatomic Contacts of Structural Units in PDB entry:
8PMQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8PMQ entry


Note, this PDB entry contains modified residue(s) PHOSPHOSERINE (SEP) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 7 chains in PDB entry 8PMQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
2
 SER 2LEU 421
9
 LYS 4THR 516
E
 SER 4PHE 156
E
 GLU 199LEU 201
E
 ASP 203VAL 206
E
 ASP 208ASP 208
U
 MET 1GLY 76
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 35 helices in PDB entry 8PMQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
2
3 15Right-handed alpha
Helix 2
2
2
26 54Right-handed alpha
Helix 3
4
2
70 115Right-handed alpha
Helix 4
6
2
133 146Right-handed alpha
Helix 5
7
2
158 166Right-handed alpha
Helix 6
8
2
172 188Right-handed alpha
Helix 7
9
2
193 203Right-handed alpha
Helix 8
10
2
210 224Right-handed alpha
Helix 9
11
2
282 300Right-handed alpha
Helix 10
12
2
307 329Right-handed alpha
Helix 11
13
2
385 391Right-handed alpha
Helix 12
14
9
12 18Right-handed alpha
Helix 13
15
9
21 59Right-handed alpha
Helix 14
16
9
64 116Right-handed alpha
Helix 15
17
9
132 153Right-handed alpha
Helix 16
18
9
169 177Right-handed alpha
Helix 17
19
9
187 200Right-handed alpha
Helix 18
20
9
206 214Right-handed alpha
Helix 19
21
9
216 220Right-handed alpha
Helix 20
22
9
226 237Right-handed alpha
Helix 21
22
9
243 254Right-handed alpha
Helix 22
22
9
262 274Right-handed alpha
Helix 23
22
9
346 352Right-handed alpha
Helix 24
25
9
354 371Right-handed alpha
Helix 25
26
9
378 389Right-handed alpha
Helix 26
27
9
421 428Right-handed alpha
Helix 27
28
9
442 448Right-handed alpha
Helix 28
29
9
472 485Right-handed alpha
Helix 29
30
E
5 17Right-handed alpha
Helix 30
32
E
99 112Right-handed alpha
Helix 31
33
E
122 129Right-handed alpha
Helix 32
33
E
134 146Right-handed alpha
Helix 33
35
E
148 155Right-handed alpha
Helix 34
38
U
23 34Right-handed alpha
Helix 35
39
U
56 59Right-handed alpha
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There are 4 sheets in PDB entry 8PMQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
9
509 514first strand
Strand 2
9
462 465anti-parallel
Strand 3
9
469 471anti-parallel
Strand 4
2
413 419parallel
Strand 5
2
374 377anti-parallel
Strand 6
2
381 384anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
9
495 498first strand
Strand 2
9
502 506anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
21 24first strand
Strand 2
E
31 37anti-parallel
Strand 3
E
48 54anti-parallel
Strand 4
E
65 68anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
U
12 16first strand
Strand 2
U
2 7anti-parallel
Strand 3
U
66 71parallel
Strand 4
U
41 44anti-parallel
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