Analysis of interatomic Contacts of Structural Units in PDB entry:
8PMR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8PMR entry

There are 4 chains in PDB entry 8PMR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 23ASN 233
B
 GLU 25GLN 234
C
 HIS 23PRO 230
D
 THR 24PRO 230
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 39 helices in PDB entry 8PMR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
30 34Right-handed 310
Helix 2
AA2
A
48 56Right-handed 310
Helix 3
AA3
A
65 70Right-handed alpha
Helix 4
AA4
A
80 89Right-handed alpha
Helix 5
AA5
A
102 106Right-handed 310
Helix 6
AA6
A
144 148Right-handed 310
Helix 7
AA7
A
151 156Right-handed 310
Helix 8
AA8
A
162 164Right-handed 310
Helix 9
AA9
A
200 207Right-handed alpha
Helix 10
AB1
A
214 219Right-handed 310
Helix 11
AB2
A
220 225Right-handed 310
Helix 12
AB3
B
30 34Right-handed 310
Helix 13
AB4
B
48 56Right-handed 310
Helix 14
AB5
B
65 70Right-handed alpha
Helix 15
AB6
B
80 89Right-handed alpha
Helix 16
AB7
B
102 106Right-handed 310
Helix 17
AB8
B
144 148Right-handed 310
Helix 18
AB9
B
151 156Right-handed 310
Helix 19
AC1
B
162 164Right-handed 310
Helix 20
AC2
B
200 207Right-handed alpha
Helix 21
AC3
B
214 219Right-handed 310
Helix 22
AC4
B
220 225Right-handed 310
Helix 23
AC5
C
24 28Right-handed 310
Helix 24
AC6
C
30 34Right-handed 310
Helix 25
AC7
C
48 56Right-handed 310
Helix 26
AC8
C
80 89Right-handed alpha
Helix 27
AC9
C
102 106Right-handed 310
Helix 28
AD1
C
144 148Right-handed 310
Helix 29
AD2
C
151 156Right-handed 310
Helix 30
AD3
C
200 207Right-handed alpha
Helix 31
AD4
C
214 218Right-handed 310
Helix 32
AD5
D
30 34Right-handed 310
Helix 33
AD6
D
48 56Right-handed 310
Helix 34
AD7
D
80 89Right-handed alpha
Helix 35
AD8
D
102 106Right-handed 310
Helix 36
AD9
D
144 148Right-handed 310
Helix 37
AE1
D
151 156Right-handed 310
Helix 38
AE2
D
200 207Right-handed alpha
Helix 39
AE3
D
214 219Right-handed alpha
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There are 4 sheets in PDB entry 8PMR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
117 121first strand
Strand 2
A
175 181anti-parallel
Strand 3
A
193 196anti-parallel
Strand 4
A
137 140anti-parallel
Strand 5
A
126 130anti-parallel
Strand 6
A
166 171anti-parallel
Strand 7
A
210 212anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
117 121first strand
Strand 2
B
175 181anti-parallel
Strand 3
B
193 196anti-parallel
Strand 4
B
137 140anti-parallel
Strand 5
B
126 130anti-parallel
Strand 6
B
166 171anti-parallel
Strand 7
B
210 212anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
117 121first strand
Strand 2
C
175 181anti-parallel
Strand 3
C
193 196anti-parallel
Strand 4
C
137 140anti-parallel
Strand 5
C
126 130anti-parallel
Strand 6
C
166 171anti-parallel
Strand 7
C
210 212anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
117 121first strand
Strand 2
D
175 181anti-parallel
Strand 3
D
193 196anti-parallel
Strand 4
D
137 140anti-parallel
Strand 5
D
126 130anti-parallel
Strand 6
D
166 171anti-parallel
Strand 7
D
210 212anti-parallel
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