Analysis of interatomic Contacts of Structural Units in PDB entry:
8PMS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8PMS entry

There are 4 chains in PDB entry 8PMS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 27PRO 215
B
 SER 27PRO 215
C
 SER 27ASP 214
D
 SER 27PRO 215
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 27 helices in PDB entry 8PMS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
30 34Right-handed 310
Helix 2
AA2
A
48 56Right-handed 310
Helix 3
AA3
A
80 89Right-handed alpha
Helix 4
AA4
A
102 106Right-handed 310
Helix 5
AA5
A
144 149Right-handed 310
Helix 6
AA6
A
151 156Right-handed 310
Helix 7
AA7
A
200 207Right-handed alpha
Helix 8
AA8
B
30 34Right-handed 310
Helix 9
AA9
B
48 56Right-handed 310
Helix 10
AB1
B
80 89Right-handed alpha
Helix 11
AB2
B
102 106Right-handed 310
Helix 12
AB3
B
144 148Right-handed 310
Helix 13
AB4
B
151 156Right-handed 310
Helix 14
AB5
B
200 207Right-handed alpha
Helix 15
AB6
C
30 34Right-handed 310
Helix 16
AB7
C
48 56Right-handed 310
Helix 17
AB8
C
80 89Right-handed alpha
Helix 18
AB9
C
102 106Right-handed 310
Helix 19
AC1
C
144 149Right-handed 310
Helix 20
AC2
C
151 156Right-handed 310
Helix 21
AC3
C
200 207Right-handed alpha
Helix 22
AC4
D
48 56Right-handed 310
Helix 23
AC5
D
80 89Right-handed alpha
Helix 24
AC6
D
102 106Right-handed 310
Helix 25
AC7
D
144 148Right-handed 310
Helix 26
AC8
D
151 156Right-handed 310
Helix 27
AC9
D
200 205Right-handed alpha
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There are 4 sheets in PDB entry 8PMS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
117 121first strand
Strand 2
A
175 181anti-parallel
Strand 3
A
193 196anti-parallel
Strand 4
A
137 140anti-parallel
Strand 5
A
126 130anti-parallel
Strand 6
A
166 171anti-parallel
Strand 7
A
210 213anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
117 121first strand
Strand 2
B
175 181anti-parallel
Strand 3
B
193 196anti-parallel
Strand 4
B
137 140anti-parallel
Strand 5
B
126 130anti-parallel
Strand 6
B
166 171anti-parallel
Strand 7
B
210 213anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
117 121first strand
Strand 2
C
175 181anti-parallel
Strand 3
C
193 196anti-parallel
Strand 4
C
137 140anti-parallel
Strand 5
C
126 130anti-parallel
Strand 6
C
166 171anti-parallel
Strand 7
C
210 212anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
117 121first strand
Strand 2
D
175 181anti-parallel
Strand 3
D
193 196anti-parallel
Strand 4
D
137 140anti-parallel
Strand 5
D
126 130anti-parallel
Strand 6
D
166 171anti-parallel
Strand 7
D
210 213anti-parallel
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