Analysis of interatomic Contacts of Structural Units in PDB entry:
8PMU


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8PMU entry

There is 1 chain in PDB entry 8PMU (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 37GLU 376
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are no helices in PDB entry 8PMU

There are 5 sheets in PDB entry 8PMU. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
123 128first strand
Strand 2
A
134 140anti-parallel
Strand 3
A
98 104anti-parallel
Strand 4
A
82 88anti-parallel
Strand 5
A
67 74anti-parallel
Strand 6
A
197 201anti-parallel
Strand 7
A
41 45anti-parallel
Strand 8
A
232 237anti-parallel
Strand 9
A
269 273anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
115 119first strand
Strand 2
A
175 184anti-parallel
Strand 3
A
161 170anti-parallel
Strand 4
A
149 158anti-parallel
Strand 5
A
51 63anti-parallel
Strand 6
A
210 221anti-parallel
Strand 7
A
227 229anti-parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
115 119first strand
Strand 2
A
175 184anti-parallel
Strand 3
A
161 170anti-parallel
Strand 4
A
149 158anti-parallel
Strand 5
A
51 63anti-parallel
Strand 6
A
210 221anti-parallel
Strand 7
A
254 258anti-parallel
Strand 8
A
245 249anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
287 295first strand
Strand 2
A
298 305anti-parallel
Strand 3
A
342 346anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
331 336first strand
Strand 2
A
312 320anti-parallel
Strand 3
A
354 361anti-parallel
Strand 4
A
366 372anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il