Analysis of interatomic Contacts of Structural Units in PDB entry:
8PMW

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8PMW entry

There are 8 chains in PDB entry 8PMW (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 1	LYS 107
B	GLU 1	SER 120
C	ASP 467	VAL 622
D	ASP 466	SER 618
E	ASP 467	HIS 617
F	ASP 467	VAL 622
G	GLU 1	VAL 119
H	ASP 1	LYS 107

There are 11 helices in PDB entry 8PMW. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	79	83	Right-handed 310
Helix 2	AA2	B	65	68	Right-handed 310
Helix 3	AA3	B	90	94	Right-handed 310
Helix 4	AA4	C	528	531	Right-handed 310
Helix 5	AA5	C	616	620	Right-handed 310
Helix 6	AA6	D	528	531	Right-handed 310
Helix 7	AA7	E	528	531	Right-handed 310
Helix 8	AA8	F	528	531	Right-handed 310
Helix 9	AA9	F	616	620	Right-handed 310
Helix 10	AB1	G	90	94	Right-handed 310
Helix 11	AB2	H	79	83	Right-handed 310

There are 24 sheets in PDB entry 8PMW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	4	7	first strand
Strand 2	A	19	25	anti-parallel
Strand 3	A	70	75	anti-parallel
Strand 4	A	62	67	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	10	13	first strand
Strand 2	A	102	106	parallel
Strand 3	A	85	90	anti-parallel
Strand 4	A	33	38	anti-parallel
Strand 5	A	45	49	anti-parallel
Strand 6	A	53	54	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	10	13	first strand
Strand 2	A	102	106	parallel
Strand 3	A	85	90	anti-parallel
Strand 4	A	97	98	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	3	7	first strand
Strand 2	B	18	25	anti-parallel
Strand 3	B	81	86	anti-parallel
Strand 4	B	71	76	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	11	12	first strand
Strand 2	B	115	119	parallel
Strand 3	B	95	103	anti-parallel
Strand 4	B	35	42	anti-parallel
Strand 5	B	46	55	anti-parallel
Strand 6	B	59	63	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	11	12	first strand
Strand 2	B	115	119	parallel
Strand 3	B	95	103	anti-parallel
Strand 4	B	106	111	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	477	478	first strand
Strand 2	C	533	534	parallel
Strand 3	C	537	538	anti-parallel

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There are 8 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	521	523	first strand
Strand 2	C	510	515	anti-parallel
Strand 3	C	483	494	anti-parallel
Strand 4	C	505	508	anti-parallel
Strand 5	C	592	595	anti-parallel
Strand 6	C	581	585	anti-parallel
Strand 7	C	547	562	anti-parallel
Strand 8	C	540	544	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	521	523	first strand
Strand 2	C	510	515	anti-parallel
Strand 3	C	483	494	anti-parallel
Strand 4	C	606	614	anti-parallel
Strand 5	C	547	562	anti-parallel
Strand 6	C	540	544	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	477	478	first strand
Strand 2	D	533	534	parallel
Strand 3	D	537	538	anti-parallel

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There are 8 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	521	523	first strand
Strand 2	D	510	515	anti-parallel
Strand 3	D	483	494	anti-parallel
Strand 4	D	505	508	anti-parallel
Strand 5	D	592	595	anti-parallel
Strand 6	D	581	585	anti-parallel
Strand 7	D	547	562	anti-parallel
Strand 8	D	540	544	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	521	523	first strand
Strand 2	D	510	515	anti-parallel
Strand 3	D	483	494	anti-parallel
Strand 4	D	606	614	anti-parallel
Strand 5	D	547	562	anti-parallel
Strand 6	D	540	544	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	477	478	first strand
Strand 2	E	533	534	parallel
Strand 3	E	537	538	anti-parallel

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There are 8 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	521	523	first strand
Strand 2	E	511	515	anti-parallel
Strand 3	E	483	494	anti-parallel
Strand 4	E	505	508	anti-parallel
Strand 5	E	592	595	anti-parallel
Strand 6	E	581	585	anti-parallel
Strand 7	E	547	562	anti-parallel
Strand 8	E	540	544	anti-parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	521	523	first strand
Strand 2	E	511	515	anti-parallel
Strand 3	E	483	494	anti-parallel
Strand 4	E	606	614	anti-parallel
Strand 5	E	547	562	anti-parallel
Strand 6	E	540	544	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	477	478	first strand
Strand 2	F	533	534	parallel
Strand 3	F	537	538	anti-parallel

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There are 8 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	521	523	first strand
Strand 2	F	510	515	anti-parallel
Strand 3	F	483	494	anti-parallel
Strand 4	F	505	508	anti-parallel
Strand 5	F	592	595	anti-parallel
Strand 6	F	581	585	anti-parallel
Strand 7	F	547	562	anti-parallel
Strand 8	F	540	544	anti-parallel

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There are 6 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	521	523	first strand
Strand 2	F	510	515	anti-parallel
Strand 3	F	483	494	anti-parallel
Strand 4	F	606	614	anti-parallel
Strand 5	F	547	562	anti-parallel
Strand 6	F	540	544	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	3	7	first strand
Strand 2	G	18	25	anti-parallel
Strand 3	G	81	86	anti-parallel
Strand 4	G	71	76	anti-parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	59	63	first strand
Strand 2	G	46	55	anti-parallel
Strand 3	G	35	42	anti-parallel
Strand 4	G	95	103	anti-parallel
Strand 5	G	106	111	anti-parallel

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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	59	63	first strand
Strand 2	G	46	55	anti-parallel
Strand 3	G	35	42	anti-parallel
Strand 4	G	95	103	anti-parallel
Strand 5	G	115	117	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	4	7	first strand
Strand 2	H	19	25	anti-parallel
Strand 3	H	70	75	anti-parallel
Strand 4	H	62	67	anti-parallel

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There are 6 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	13	first strand
Strand 2	H	102	106	parallel
Strand 3	H	85	90	anti-parallel
Strand 4	H	33	38	anti-parallel
Strand 5	H	45	49	anti-parallel
Strand 6	H	53	54	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	13	first strand
Strand 2	H	102	106	parallel
Strand 3	H	85	90	anti-parallel
Strand 4	H	97	98	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8PMW

Analysis of interatomic Contacts of Structural Units in PDB entry:
8PMW