Analysis of interatomic Contacts of Structural Units in PDB entry:
8PMX


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8PMX entry

There are 4 chains in PDB entry 8PMX (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 454PRO 607
B
 ASP 454PRO 607
H
 VAL 2SER 224
L
 ALA 3GLU 215
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 4 helices in PDB entry 8PMX. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
515 519Right-handed 310
Helix 2
AA2
B
512 514Right-handed 310
Helix 3
AA3
B
515 519Right-handed 310
Helix 4
AA4
L
126 130Right-handed 310
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There are 15 sheets in PDB entry 8PMX. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
464 465first strand
Strand 2
A
520 521parallel
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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
508 510first strand
Strand 2
A
499 502anti-parallel
Strand 3
A
470 481anti-parallel
Strand 4
A
595 603anti-parallel
Strand 5
A
537 549anti-parallel
Strand 6
A
568 573anti-parallel
Strand 7
A
579 584anti-parallel
Strand 8
A
492 495anti-parallel
Strand 9
A
470 481anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
464 465first strand
Strand 2
B
520 521parallel
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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
508 510first strand
Strand 2
B
499 502anti-parallel
Strand 3
B
470 481anti-parallel
Strand 4
B
492 495anti-parallel
Strand 5
B
579 584anti-parallel
Strand 6
B
568 573anti-parallel
Strand 7
B
535 549anti-parallel
Strand 8
B
529 530anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
508 510first strand
Strand 2
B
499 502anti-parallel
Strand 3
B
470 481anti-parallel
Strand 4
B
595 603anti-parallel
Strand 5
B
535 549anti-parallel
Strand 6
B
529 530anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
4 6first strand
Strand 2
H
19 24anti-parallel
Strand 3
H
78 82anti-parallel
Strand 4
H
71 73anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
45 50first strand
Strand 2
H
35 39anti-parallel
Strand 3
H
92 97anti-parallel
Strand 4
H
116 118anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
132 133first strand
Strand 2
H
148 150anti-parallel
Strand 3
H
188 190anti-parallel
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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
160 162first strand
Strand 2
H
204 208anti-parallel
Strand 3
H
215 219anti-parallel
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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
18 23first strand
Strand 2
L
72 77anti-parallel
Strand 3
L
64 65anti-parallel
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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
18 23first strand
Strand 2
L
72 77anti-parallel
Strand 3
L
68 69anti-parallel
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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
47 50first strand
Strand 2
L
36 40anti-parallel
Strand 3
L
87 92anti-parallel
Strand 4
L
101 102anti-parallel
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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
47 50first strand
Strand 2
L
36 40anti-parallel
Strand 3
L
87 92anti-parallel
Strand 4
L
106 107anti-parallel
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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
141 142first strand
Strand 2
L
178 182anti-parallel
Strand 3
L
165 167anti-parallel
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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
151 152first strand
Strand 2
L
199 200anti-parallel
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