Analysis of interatomic Contacts of Structural Units in PDB entry:
8PMZ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8PMZ entry

There are 4 chains in PDB entry 8PMZ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 459	SER 605
B	GLN 1	LYS 250
C	SER 459	VAL 609
D	GLN 1	GLU 248

There are 16 helices in PDB entry 8PMZ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	512	514	Right-handed 310
Helix 2	AA2	A	515	518	Right-handed 310
Helix 3	AA3	B	28	30	Right-handed 310
Helix 4	AA4	B	62	65	Right-handed 310
Helix 5	AA5	B	74	76	Right-handed 310
Helix 6	AA6	B	87	91	Right-handed 310
Helix 7	AA7	B	105	109	Right-handed 310
Helix 8	AA8	B	221	225	Right-handed 310
Helix 9	AA9	C	512	514	Right-handed 310
Helix 10	AB1	C	515	518	Right-handed 310
Helix 11	AB2	D	28	30	Right-handed 310
Helix 12	AB3	D	62	65	Right-handed 310
Helix 13	AB4	D	74	76	Right-handed 310
Helix 14	AB5	D	87	91	Right-handed 310
Helix 15	AB6	D	105	109	Right-handed 310
Helix 16	AB7	D	221	225	Right-handed 310

There are 16 sheets in PDB entry 8PMZ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	464	465	first strand
Strand 2	A	520	521	parallel
Strand 3	A	524	525	anti-parallel

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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	508	510	first strand
Strand 2	A	498	502	anti-parallel
Strand 3	A	470	481	anti-parallel
Strand 4	A	492	495	anti-parallel
Strand 5	A	579	582	anti-parallel
Strand 6	A	568	572	anti-parallel
Strand 7	A	534	549	anti-parallel
Strand 8	A	528	531	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	508	510	first strand
Strand 2	A	498	502	anti-parallel
Strand 3	A	470	481	anti-parallel
Strand 4	A	593	601	anti-parallel
Strand 5	A	534	549	anti-parallel
Strand 6	A	528	531	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	3	6	first strand
Strand 2	B	18	25	anti-parallel
Strand 3	B	78	83	anti-parallel
Strand 4	B	68	73	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	10	12	first strand
Strand 2	B	118	122	parallel
Strand 3	B	92	100	anti-parallel
Strand 4	B	32	39	anti-parallel
Strand 5	B	46	51	anti-parallel
Strand 6	B	58	60	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	146	149	first strand
Strand 2	B	161	167	anti-parallel
Strand 3	B	212	217	anti-parallel
Strand 4	B	204	207	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	152	155	first strand
Strand 2	B	245	249	parallel
Strand 3	B	227	232	anti-parallel
Strand 4	B	175	180	anti-parallel
Strand 5	B	187	191	anti-parallel
Strand 6	B	195	196	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	152	155	first strand
Strand 2	B	245	249	parallel
Strand 3	B	227	232	anti-parallel
Strand 4	B	240	241	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	464	465	first strand
Strand 2	C	520	521	parallel
Strand 3	C	524	525	anti-parallel

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There are 8 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	508	510	first strand
Strand 2	C	498	502	anti-parallel
Strand 3	C	470	481	anti-parallel
Strand 4	C	492	495	anti-parallel
Strand 5	C	579	582	anti-parallel
Strand 6	C	568	572	anti-parallel
Strand 7	C	534	549	anti-parallel
Strand 8	C	528	531	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	508	510	first strand
Strand 2	C	498	502	anti-parallel
Strand 3	C	470	481	anti-parallel
Strand 4	C	593	601	anti-parallel
Strand 5	C	534	549	anti-parallel
Strand 6	C	528	531	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	3	6	first strand
Strand 2	D	18	25	anti-parallel
Strand 3	D	78	83	anti-parallel
Strand 4	D	68	73	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	10	12	first strand
Strand 2	D	118	122	parallel
Strand 3	D	92	100	anti-parallel
Strand 4	D	32	39	anti-parallel
Strand 5	D	46	51	anti-parallel
Strand 6	D	58	60	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	146	148	first strand
Strand 2	D	161	167	anti-parallel
Strand 3	D	212	217	anti-parallel
Strand 4	D	204	209	anti-parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	152	154	first strand
Strand 2	D	245	248	parallel
Strand 3	D	227	232	anti-parallel
Strand 4	D	175	180	anti-parallel
Strand 5	D	187	191	anti-parallel
Strand 6	D	195	196	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	152	154	first strand
Strand 2	D	245	248	parallel
Strand 3	D	227	232	anti-parallel
Strand 4	D	240	241	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8PMZ

Analysis of interatomic Contacts of Structural Units in PDB entry:
8PMZ