Analysis of interatomic Contacts of Structural Units in PDB entry:
8PN5

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8PN5 entry

There are 16 chains in PDB entry 8PN5 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 36	SER 377
B	GLY 0	SER 377
C	GLY -1	ASN 375
D	GLY 0	GLU 376
E	GLY -2	GLU 376
F	GLY -2	GLU 376
G	GLY -1	LYS 374
H	GLY -1	ASN 375
I	ALA 4	LYS 14
J	ALA 4	LYS 14
K	ALA 4	LYS 14
L	ALA 4	LYS 14
M	ALA 4	LYS 14
N	ALA 5	LYS 14
O	ALA 4	LYS 14
P	ALA 4	LYS 14

There are no helices in PDB entry 8PN5

There are 40 sheets in PDB entry 8PN5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	123	128	first strand
Strand 2	A	134	140	anti-parallel
Strand 3	A	97	105	anti-parallel
Strand 4	A	82	90	anti-parallel
Strand 5	A	67	74	anti-parallel
Strand 6	A	197	201	anti-parallel
Strand 7	A	41	45	anti-parallel
Strand 8	A	232	237	anti-parallel
Strand 9	A	269	273	anti-parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	115	119	first strand
Strand 2	A	175	184	anti-parallel
Strand 3	A	161	170	anti-parallel
Strand 4	A	149	158	anti-parallel
Strand 5	A	51	63	anti-parallel
Strand 6	A	210	221	anti-parallel
Strand 7	A	227	229	anti-parallel

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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	115	119	first strand
Strand 2	A	175	184	anti-parallel
Strand 3	A	161	170	anti-parallel
Strand 4	A	149	158	anti-parallel
Strand 5	A	51	63	anti-parallel
Strand 6	A	210	221	anti-parallel
Strand 7	A	254	258	anti-parallel
Strand 8	A	245	249	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	287	295	first strand
Strand 2	A	298	305	anti-parallel
Strand 3	A	342	346	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	331	337	first strand
Strand 2	A	312	320	anti-parallel
Strand 3	A	354	361	anti-parallel
Strand 4	A	366	372	anti-parallel

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There are 9 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	123	128	first strand
Strand 2	B	134	140	anti-parallel
Strand 3	B	97	105	anti-parallel
Strand 4	B	82	90	anti-parallel
Strand 5	B	67	74	anti-parallel
Strand 6	B	197	201	anti-parallel
Strand 7	B	41	45	anti-parallel
Strand 8	B	232	237	anti-parallel
Strand 9	B	269	273	anti-parallel

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	115	119	first strand
Strand 2	B	175	184	anti-parallel
Strand 3	B	161	170	anti-parallel
Strand 4	B	149	158	anti-parallel
Strand 5	B	51	63	anti-parallel
Strand 6	B	210	221	anti-parallel
Strand 7	B	227	229	anti-parallel

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There are 8 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	115	119	first strand
Strand 2	B	175	184	anti-parallel
Strand 3	B	161	170	anti-parallel
Strand 4	B	149	158	anti-parallel
Strand 5	B	51	63	anti-parallel
Strand 6	B	210	221	anti-parallel
Strand 7	B	254	258	anti-parallel
Strand 8	B	245	249	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	287	295	first strand
Strand 2	B	298	305	anti-parallel
Strand 3	B	342	346	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	331	337	first strand
Strand 2	B	312	320	anti-parallel
Strand 3	B	354	361	anti-parallel
Strand 4	B	366	372	anti-parallel

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There are 9 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	123	128	first strand
Strand 2	C	134	140	anti-parallel
Strand 3	C	97	105	anti-parallel
Strand 4	C	82	90	anti-parallel
Strand 5	C	67	74	anti-parallel
Strand 6	C	197	201	anti-parallel
Strand 7	C	41	45	anti-parallel
Strand 8	C	232	237	anti-parallel
Strand 9	C	269	273	anti-parallel

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There are 7 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	115	119	first strand
Strand 2	C	175	184	anti-parallel
Strand 3	C	161	170	anti-parallel
Strand 4	C	149	158	anti-parallel
Strand 5	C	51	63	anti-parallel
Strand 6	C	210	221	anti-parallel
Strand 7	C	227	229	anti-parallel

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There are 8 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	115	119	first strand
Strand 2	C	175	184	anti-parallel
Strand 3	C	161	170	anti-parallel
Strand 4	C	149	158	anti-parallel
Strand 5	C	51	63	anti-parallel
Strand 6	C	210	221	anti-parallel
Strand 7	C	254	258	anti-parallel
Strand 8	C	245	249	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	287	295	first strand
Strand 2	C	298	305	anti-parallel
Strand 3	C	342	346	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	331	337	first strand
Strand 2	C	312	320	anti-parallel
Strand 3	C	354	361	anti-parallel
Strand 4	C	366	372	anti-parallel

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There are 9 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	123	128	first strand
Strand 2	D	134	140	anti-parallel
Strand 3	D	97	105	anti-parallel
Strand 4	D	82	90	anti-parallel
Strand 5	D	67	74	anti-parallel
Strand 6	D	197	201	anti-parallel
Strand 7	D	41	45	anti-parallel
Strand 8	D	232	237	anti-parallel
Strand 9	D	269	273	anti-parallel

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There are 7 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	115	119	first strand
Strand 2	D	175	184	anti-parallel
Strand 3	D	161	170	anti-parallel
Strand 4	D	149	158	anti-parallel
Strand 5	D	51	63	anti-parallel
Strand 6	D	210	221	anti-parallel
Strand 7	D	227	229	anti-parallel

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There are 8 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	115	119	first strand
Strand 2	D	175	184	anti-parallel
Strand 3	D	161	170	anti-parallel
Strand 4	D	149	158	anti-parallel
Strand 5	D	51	63	anti-parallel
Strand 6	D	210	221	anti-parallel
Strand 7	D	254	258	anti-parallel
Strand 8	D	245	249	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	287	295	first strand
Strand 2	D	298	305	anti-parallel
Strand 3	D	342	346	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	331	337	first strand
Strand 2	D	312	320	anti-parallel
Strand 3	D	354	361	anti-parallel
Strand 4	D	366	372	anti-parallel

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There are 9 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	123	128	first strand
Strand 2	E	134	140	anti-parallel
Strand 3	E	97	105	anti-parallel
Strand 4	E	82	90	anti-parallel
Strand 5	E	67	74	anti-parallel
Strand 6	E	197	201	anti-parallel
Strand 7	E	41	45	anti-parallel
Strand 8	E	232	237	anti-parallel
Strand 9	E	269	273	anti-parallel

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There are 7 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	115	119	first strand
Strand 2	E	175	184	anti-parallel
Strand 3	E	161	170	anti-parallel
Strand 4	E	149	158	anti-parallel
Strand 5	E	51	63	anti-parallel
Strand 6	E	210	221	anti-parallel
Strand 7	E	227	229	anti-parallel

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There are 8 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	115	119	first strand
Strand 2	E	175	184	anti-parallel
Strand 3	E	161	170	anti-parallel
Strand 4	E	149	158	anti-parallel
Strand 5	E	51	63	anti-parallel
Strand 6	E	210	221	anti-parallel
Strand 7	E	254	258	anti-parallel
Strand 8	E	245	249	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	287	295	first strand
Strand 2	E	298	305	anti-parallel
Strand 3	E	342	346	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	331	337	first strand
Strand 2	E	312	320	anti-parallel
Strand 3	E	354	361	anti-parallel
Strand 4	E	366	372	anti-parallel

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There are 9 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	123	128	first strand
Strand 2	F	134	140	anti-parallel
Strand 3	F	97	105	anti-parallel
Strand 4	F	82	90	anti-parallel
Strand 5	F	67	74	anti-parallel
Strand 6	F	197	201	anti-parallel
Strand 7	F	41	45	anti-parallel
Strand 8	F	232	237	anti-parallel
Strand 9	F	269	273	anti-parallel

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There are 7 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	115	119	first strand
Strand 2	F	175	184	anti-parallel
Strand 3	F	161	170	anti-parallel
Strand 4	F	149	158	anti-parallel
Strand 5	F	51	63	anti-parallel
Strand 6	F	210	221	anti-parallel
Strand 7	F	227	229	anti-parallel

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There are 8 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	115	119	first strand
Strand 2	F	175	184	anti-parallel
Strand 3	F	161	170	anti-parallel
Strand 4	F	149	158	anti-parallel
Strand 5	F	51	63	anti-parallel
Strand 6	F	210	221	anti-parallel
Strand 7	F	254	258	anti-parallel
Strand 8	F	245	249	anti-parallel

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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	287	295	first strand
Strand 2	F	298	305	anti-parallel
Strand 3	F	342	346	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	331	337	first strand
Strand 2	F	312	320	anti-parallel
Strand 3	F	354	361	anti-parallel
Strand 4	F	366	372	anti-parallel

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There are 9 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	123	128	first strand
Strand 2	G	134	140	anti-parallel
Strand 3	G	97	105	anti-parallel
Strand 4	G	82	90	anti-parallel
Strand 5	G	67	74	anti-parallel
Strand 6	G	197	201	anti-parallel
Strand 7	G	41	45	anti-parallel
Strand 8	G	232	237	anti-parallel
Strand 9	G	269	273	anti-parallel

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There are 7 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	115	119	first strand
Strand 2	G	175	184	anti-parallel
Strand 3	G	161	170	anti-parallel
Strand 4	G	149	158	anti-parallel
Strand 5	G	51	63	anti-parallel
Strand 6	G	210	221	anti-parallel
Strand 7	G	227	229	anti-parallel

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There are 8 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	115	119	first strand
Strand 2	G	175	184	anti-parallel
Strand 3	G	161	170	anti-parallel
Strand 4	G	149	158	anti-parallel
Strand 5	G	51	63	anti-parallel
Strand 6	G	210	221	anti-parallel
Strand 7	G	254	258	anti-parallel
Strand 8	G	245	249	anti-parallel

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There are 3 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	287	295	first strand
Strand 2	G	298	305	anti-parallel
Strand 3	G	342	346	anti-parallel

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There are 4 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	331	337	first strand
Strand 2	G	312	320	anti-parallel
Strand 3	G	354	361	anti-parallel
Strand 4	G	366	372	anti-parallel

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There are 9 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	123	128	first strand
Strand 2	H	134	140	anti-parallel
Strand 3	H	97	105	anti-parallel
Strand 4	H	82	90	anti-parallel
Strand 5	H	67	74	anti-parallel
Strand 6	H	197	201	anti-parallel
Strand 7	H	41	45	anti-parallel
Strand 8	H	232	237	anti-parallel
Strand 9	H	269	273	anti-parallel

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There are 7 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	115	119	first strand
Strand 2	H	175	184	anti-parallel
Strand 3	H	161	170	anti-parallel
Strand 4	H	149	158	anti-parallel
Strand 5	H	51	63	anti-parallel
Strand 6	H	210	221	anti-parallel
Strand 7	H	227	229	anti-parallel

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There are 8 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	115	119	first strand
Strand 2	H	175	184	anti-parallel
Strand 3	H	161	170	anti-parallel
Strand 4	H	149	158	anti-parallel
Strand 5	H	51	63	anti-parallel
Strand 6	H	210	221	anti-parallel
Strand 7	H	254	258	anti-parallel
Strand 8	H	245	249	anti-parallel

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There are 3 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	287	295	first strand
Strand 2	H	298	305	anti-parallel
Strand 3	H	342	346	anti-parallel

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There are 4 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	331	337	first strand
Strand 2	H	312	320	anti-parallel
Strand 3	H	354	361	anti-parallel
Strand 4	H	366	372	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8PN5

Analysis of interatomic Contacts of Structural Units in PDB entry:
8PN5