Analysis of interatomic Contacts of Structural Units in PDB entry:
8PN9

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8PN9 entry

There are 8 chains in PDB entry 8PN9 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 7	THR 705
B	MET 1	PRO 33
C	GLU 2	VAL 79
D	SER 4	GLY 113
E	PRO 29	GLN 594
F	LYS 368	THR 629
H	PRO 28	LEU 147
G	ALA 42	LYS 452

There are 64 helices in PDB entry 8PN9. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	10	32	Right-handed alpha
Helix 2	AA2	A	35	41	Right-handed alpha
Helix 3	AA3	A	49	63	Right-handed alpha
Helix 4	AA4	A	64	68	Right-handed 310
Helix 5	AA5	A	91	106	Right-handed alpha
Helix 6	AA6	A	119	124	Right-handed alpha
Helix 7	AA7	A	125	139	Right-handed alpha
Helix 8	AA8	A	141	153	Right-handed alpha
Helix 9	AA9	A	154	160	Right-handed alpha
Helix 10	AB1	A	171	190	Right-handed alpha
Helix 11	AB2	A	191	204	Right-handed alpha
Helix 12	AB3	A	214	229	Right-handed alpha
Helix 13	AB4	A	233	253	Right-handed alpha
Helix 14	AB5	A	267	290	Right-handed alpha
Helix 15	AB6	A	291	299	Right-handed alpha
Helix 16	AB7	A	327	332	Right-handed alpha
Helix 17	AB8	A	337	342	Right-handed alpha
Helix 18	AB9	A	356	364	Right-handed alpha
Helix 19	AC1	A	366	381	Right-handed alpha
Helix 20	AC2	A	385	403	Right-handed alpha
Helix 21	AC3	A	406	432	Right-handed alpha
Helix 22	AC4	A	454	482	Right-handed alpha
Helix 23	AC5	A	503	515	Right-handed alpha
Helix 24	AC6	A	525	527	Right-handed 310
Helix 25	AC7	A	528	535	Right-handed alpha
Helix 26	AC8	A	550	559	Right-handed alpha
Helix 27	AC9	A	562	573	Right-handed alpha
Helix 28	AD1	A	595	604	Right-handed alpha
Helix 29	AD2	A	633	636	Right-handed 310
Helix 30	AD3	A	637	642	Right-handed alpha
Helix 31	AD4	B	3	31	Right-handed alpha
Helix 32	AD5	C	14	16	Right-handed 310
Helix 33	AD6	C	17	42	Right-handed alpha
Helix 34	AD7	C	49	75	Right-handed alpha
Helix 35	AD8	D	5	16	Right-handed alpha
Helix 36	AD9	D	24	49	Right-handed alpha
Helix 37	AE1	D	52	78	Right-handed alpha
Helix 38	AE2	D	89	112	Right-handed alpha
Helix 39	AE3	E	77	79	Right-handed 310
Helix 40	AE4	E	262	269	Right-handed alpha
Helix 41	AE5	E	338	342	Right-handed alpha
Helix 42	AE6	E	431	435	Right-handed 310
Helix 43	AE7	E	436	458	Right-handed alpha
Helix 44	AE8	E	466	501	Right-handed alpha
Helix 45	AE9	E	508	534	Right-handed alpha
Helix 46	AF1	E	540	565	Right-handed alpha
Helix 47	AF2	E	572	593	Right-handed alpha
Helix 48	AF3	F	538	549	Right-handed alpha
Helix 49	AF4	F	550	564	Right-handed alpha
Helix 50	AF5	F	573	596	Right-handed alpha
Helix 51	AF6	F	601	629	Right-handed alpha
Helix 52	AF7	H	29	46	Right-handed alpha
Helix 53	AF8	H	47	54	Right-handed alpha
Helix 54	AF9	H	83	108	Right-handed alpha
Helix 55	AG1	H	113	143	Right-handed alpha
Helix 56	AG2	G	55	60	Right-handed alpha
Helix 57	AG3	G	60	70	Right-handed alpha
Helix 58	AG4	G	112	122	Right-handed alpha
Helix 59	AG5	G	135	146	Right-handed alpha
Helix 60	AG6	G	260	264	Right-handed 310
Helix 61	AG7	G	265	270	Right-handed alpha
Helix 62	AG8	G	287	300	Right-handed alpha
Helix 63	AG9	G	422	424	Right-handed 310
Helix 64	AH1	G	425	448	Right-handed alpha

There are 24 sheets in PDB entry 8PN9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	72	73	first strand
Strand 2	A	82	83	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	490	491	first strand
Strand 2	A	501	502	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	577	580	first strand
Strand 2	A	690	694	anti-parallel
Strand 3	A	678	683	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	660	661	first strand
Strand 2	A	666	667	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	7	8	first strand
Strand 2	E	343	345	anti-parallel
Strand 3	E	348	354	anti-parallel
Strand 4	E	423	429	anti-parallel
Strand 5	E	381	384	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	31	33	first strand
Strand 2	E	47	57	anti-parallel
Strand 3	E	39	41	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	31	33	first strand
Strand 2	E	47	57	anti-parallel
Strand 3	E	126	135	anti-parallel
Strand 4	E	81	85	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	70	71	first strand
Strand 2	E	113	115	anti-parallel
Strand 3	E	96	98	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	140	141	first strand
Strand 2	E	154	157	anti-parallel
Strand 3	E	215	216	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	174	176	first strand
Strand 2	E	197	199	anti-parallel
Strand 3	E	192	193	anti-parallel

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There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	292	295	first strand
Strand 2	E	328	337	anti-parallel
Strand 3	E	241	252	anti-parallel
Strand 4	E	225	235	anti-parallel
Strand 5	E	368	373	parallel
Strand 6	E	406	413	anti-parallel
Strand 7	E	390	391	anti-parallel

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There are 7 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	292	295	first strand
Strand 2	E	328	337	anti-parallel
Strand 3	E	241	252	anti-parallel
Strand 4	E	225	235	anti-parallel
Strand 5	E	368	373	parallel
Strand 6	E	406	413	anti-parallel
Strand 7	E	395	397	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	280	284	first strand
Strand 2	E	312	316	anti-parallel
Strand 3	E	303	307	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	364	365	first strand
Strand 2	E	416	417	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	393	396	first strand
Strand 2	F	378	381	anti-parallel
Strand 3	F	415	417	anti-parallel
Strand 4	F	460	462	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	405	408	first strand
Strand 2	F	497	503	parallel
Strand 3	F	479	482	anti-parallel
Strand 4	F	433	439	anti-parallel
Strand 5	F	446	450	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	405	408	first strand
Strand 2	F	497	503	parallel
Strand 3	F	479	482	anti-parallel
Strand 4	F	433	439	anti-parallel
Strand 5	F	485	486	anti-parallel

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There are 7 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	73	78	first strand
Strand 2	G	46	51	parallel
Strand 3	G	96	100	parallel
Strand 4	G	125	128	parallel
Strand 5	G	254	257	parallel
Strand 6	G	245	248	anti-parallel
Strand 7	G	212	213	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	87	88	first strand
Strand 2	G	91	92	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	147	149	first strand
Strand 2	G	202	204	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	173	175	first strand
Strand 2	G	195	197	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	273	274	first strand
Strand 2	G	282	283	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	307	315	first strand
Strand 2	G	330	338	anti-parallel
Strand 3	G	374	380	anti-parallel
Strand 4	G	369	371	anti-parallel

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There are 5 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	325	326	first strand
Strand 2	G	403	411	parallel
Strand 3	G	386	393	anti-parallel
Strand 4	G	354	358	anti-parallel
Strand 5	G	362	367	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8PN9

Analysis of interatomic Contacts of Structural Units in PDB entry:
8PN9