Analysis of interatomic Contacts of Structural Units in PDB entry:
8PNE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8PNE entry

There is 1 chain in PDB entry 8PNE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1CYS 199
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 8PNE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
16 28Right-handed alpha
Helix 2
AA2
A
30 38Right-handed alpha
Helix 3
AA3
A
41 49Right-handed alpha
Helix 4
AA4
A
53 66Right-handed alpha
Helix 5
AA5
A
70 79Right-handed alpha
Helix 6
AA6
A
86 99Right-handed alpha
Helix 7
AA7
A
117 120Right-handed 310
Helix 8
AA8
A
121 126Right-handed alpha
Helix 9
AA9
A
134 138Right-handed alpha
Helix 10
AB1
A
143 155Right-handed alpha
Helix 11
AB2
A
157 159Right-handed 310
Helix 12
AB3
A
167 176Right-handed alpha
Helix 13
AB4
A
188 194Right-handed alpha
Helix 14
AB5
A
194 199Right-handed alpha
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There are 2 sheets in PDB entry 8PNE. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
130 133first strand
Strand 2
A
102 107parallel
Strand 3
A
2 5parallel
Strand 4
A
161 165parallel
Strand 5
A
180 183parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
12 15first strand
Strand 2
A
82 85anti-parallel
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