Analysis of interatomic Contacts of Structural Units in PDB entry:
8PNF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8PNF entry

There are 5 chains in PDB entry 8PNF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
1
 GLU 7TYR 289
2
 CYS 7GLN 262
3
 GLY 1GLU 236
4
 SER 23ASN 69
A
 A 1 U 14
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 8PNF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
1
36 40Right-handed 310
Helix 2
AA2
1
46 50Right-handed 310
Helix 3
AA3
1
66 71Right-handed alpha
Helix 4
AA4
1
109 117Right-handed alpha
Helix 5
AA5
1
165 170Right-handed 310
Helix 6
AA6
2
35 37Right-handed 310
Helix 7
AA7
2
56 61Right-handed alpha
Helix 8
AA8
2
89 98Right-handed alpha
Helix 9
AA9
2
143 148Right-handed alpha
Helix 10
AB1
2
149 153Right-handed 310
Helix 11
AB2
2
177 184Right-handed 310
Helix 12
AB3
3
64 66Right-handed 310
Helix 13
AB4
3
89 93Right-handed 310
Helix 14
AB5
3
95 101Right-handed alpha
Helix 15
AB6
3
141 147Right-handed alpha
Helix 16
AB7
4
50 55Right-handed alpha
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There are 12 sheets in PDB entry 8PNF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
1
18 20first strand
Strand 2
1
56 57anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
1
34 35first strand
Strand 2
3
160 165anti-parallel
Strand 3
3
111 117anti-parallel
Strand 4
3
205 213anti-parallel
Strand 5
3
51 52anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
1
34 35first strand
Strand 2
3
160 165anti-parallel
Strand 3
3
111 117anti-parallel
Strand 4
3
205 213anti-parallel
Strand 5
3
68 71anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
1
75 84first strand
Strand 2
1
237 255anti-parallel
Strand 3
1
119 135anti-parallel
Strand 4
1
197 198anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
1
183 188first strand
Strand 2
1
119 135anti-parallel
Strand 3
1
237 255anti-parallel
Strand 4
3
39 40anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
1
99 103first strand
Strand 2
1
223 228anti-parallel
Strand 3
1
147 153anti-parallel
Strand 4
1
175 179anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
2
14 18first strand
Strand 2
2
21 25anti-parallel
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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
2
31 33first strand
Strand 2
2
196 201parallel
Strand 3
2
99 111anti-parallel
Strand 4
2
238 254anti-parallel
Strand 5
2
64 65anti-parallel
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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
2
31 33first strand
Strand 2
2
196 201parallel
Strand 3
2
99 111anti-parallel
Strand 4
2
238 254anti-parallel
Strand 5
2
69 71anti-parallel
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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
2
154 155first strand
Strand 2
2
78 82anti-parallel
Strand 3
2
218 229anti-parallel
Strand 4
2
119 128anti-parallel
Strand 5
2
186 190anti-parallel
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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
3
79 84first strand
Strand 2
3
186 196anti-parallel
Strand 3
3
124 132anti-parallel
Strand 4
3
149 154anti-parallel
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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
3
174 175first strand
Strand 2
3
104 108anti-parallel
Strand 3
3
218 222anti-parallel
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