Analysis of interatomic Contacts of Structural Units in PDB entry:
8PNG


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8PNG entry

There are 2 chains in PDB entry 8PNG (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 ASP 3PHE 592
A
 GLY -1PHE 592
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 60 helices in PDB entry 8PNG. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
7 17Right-handed alpha
Helix 2
AA2
B
20 27Right-handed alpha
Helix 3
AA3
B
28 33Right-handed alpha
Helix 4
AA4
B
36 55Right-handed alpha
Helix 5
AA5
B
58 66Right-handed alpha
Helix 6
AA6
B
79 90Right-handed alpha
Helix 7
AA7
B
91 95Right-handed 310
Helix 8
AA8
B
98 102Right-handed 310
Helix 9
AA9
B
107 122Right-handed alpha
Helix 10
AB1
B
122 143Right-handed alpha
Helix 11
AB2
B
144 157Right-handed alpha
Helix 12
AB3
B
174 178Right-handed 310
Helix 13
AB4
B
223 228Right-handed 310
Helix 14
AB5
B
286 288Right-handed 310
Helix 15
AB6
B
289 322Right-handed alpha
Helix 16
AB7
B
340 343Right-handed 310
Helix 17
AB8
B
344 378Right-handed alpha
Helix 18
AB9
B
380 417Right-handed alpha
Helix 19
AC1
B
418 426Right-handed 310
Helix 20
AC2
B
427 439Right-handed alpha
Helix 21
AC3
B
444 455Right-handed alpha
Helix 22
AC4
B
457 461Right-handed 310
Helix 23
AC5
B
462 478Right-handed alpha
Helix 24
AC6
B
483 509Right-handed alpha
Helix 25
AC7
B
512 545Right-handed alpha
Helix 26
AC8
B
549 566Right-handed alpha
Helix 27
AC9
B
569 579Right-handed alpha
Helix 28
AD1
B
580 586Right-handed 310
Helix 29
AD2
B
588 592Right-handed 310
Helix 30
AD3
A
7 17Right-handed alpha
Helix 31
AD4
A
20 28Right-handed alpha
Helix 32
AD5
A
28 33Right-handed alpha
Helix 33
AD6
A
36 54Right-handed alpha
Helix 34
AD7
A
55 57Right-handed 310
Helix 35
AD8
A
58 66Right-handed alpha
Helix 36
AD9
A
79 90Right-handed alpha
Helix 37
AE1
A
91 95Right-handed 310
Helix 38
AE2
A
98 102Right-handed 310
Helix 39
AE3
A
107 122Right-handed alpha
Helix 40
AE4
A
122 143Right-handed alpha
Helix 41
AE5
A
144 157Right-handed alpha
Helix 42
AE6
A
174 178Right-handed 310
Helix 43
AE7
A
224 228Right-handed 310
Helix 44
AE8
A
286 288Right-handed 310
Helix 45
AE9
A
289 322Right-handed alpha
Helix 46
AF1
A
340 343Right-handed 310
Helix 47
AF2
A
344 378Right-handed alpha
Helix 48
AF3
A
380 416Right-handed alpha
Helix 49
AF4
A
417 426Right-handed 310
Helix 50
AF5
A
427 437Right-handed alpha
Helix 51
AF6
A
438 440Right-handed 310
Helix 52
AF7
A
444 455Right-handed alpha
Helix 53
AF8
A
457 461Right-handed 310
Helix 54
AF9
A
462 478Right-handed alpha
Helix 55
AG1
A
483 509Right-handed alpha
Helix 56
AG2
A
512 546Right-handed alpha
Helix 57
AG3
A
549 566Right-handed alpha
Helix 58
AG4
A
569 580Right-handed alpha
Helix 59
AG5
A
581 586Right-handed 310
Helix 60
AG6
A
588 592Right-handed 310
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There are 8 sheets in PDB entry 8PNG. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
68 70first strand
Strand 2
B
73 75anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
160 165first strand
Strand 2
B
209 216parallel
Strand 3
B
229 234anti-parallel
Strand 4
B
266 279anti-parallel
Strand 5
B
190 200anti-parallel
Strand 6
B
181 184anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
160 165first strand
Strand 2
B
209 216parallel
Strand 3
B
229 234anti-parallel
Strand 4
B
266 279anti-parallel
Strand 5
B
250 255anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
236 238first strand
Strand 2
B
244 247anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
68 70first strand
Strand 2
A
73 75anti-parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
160 165first strand
Strand 2
A
209 216parallel
Strand 3
A
229 234anti-parallel
Strand 4
A
266 279anti-parallel
Strand 5
A
190 200anti-parallel
Strand 6
A
181 184anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
160 165first strand
Strand 2
A
209 216parallel
Strand 3
A
229 234anti-parallel
Strand 4
A
266 279anti-parallel
Strand 5
A
250 255anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
236 238first strand
Strand 2
A
244 247anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il