Analysis of interatomic Contacts of Structural Units in PDB entry:
8PNJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8PNJ entry

There is 1 chain in PDB entry 8PNJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 24ASP 416
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 8PNJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
24 40Right-handed alpha
Helix 2
AA2
A
40 51Right-handed alpha
Helix 3
AA3
A
57 71Right-handed alpha
Helix 4
AA4
A
76 102Right-handed alpha
Helix 5
AA5
A
118 141Right-handed alpha
Helix 6
AA6
A
145 154Right-handed alpha
Helix 7
AA7
A
159 174Right-handed alpha
Helix 8
AA8
A
183 192Right-handed alpha
Helix 9
AA9
A
216 230Right-handed alpha
Helix 10
AB1
A
242 249Right-handed alpha
Helix 11
AB2
A
262 269Right-handed alpha
Helix 12
AB3
A
287 292Right-handed 310
Helix 13
AB4
A
294 299Right-handed alpha
Helix 14
AB5
A
311 321Right-handed alpha
Helix 15
AB6
A
335 341Right-handed alpha
Helix 16
AB7
A
351 361Right-handed alpha
Helix 17
AB8
A
384 402Right-handed alpha
Helix 18
AB9
A
403 411Right-handed alpha
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There are 3 sheets in PDB entry 8PNJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
232 237first strand
Strand 2
A
193 198parallel
Strand 3
A
254 255parallel
Strand 4
A
375 381anti-parallel
Strand 5
A
270 278anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
207 208first strand
Strand 2
A
214 215anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
325 328first strand
Strand 2
A
304 307parallel
Strand 3
A
346 350parallel
Strand 4
A
280 285anti-parallel
Strand 5
A
364 366anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il