Analysis of interatomic Contacts of Structural Units in PDB entry:
8PNK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8PNK entry

There is 1 chain in PDB entry 8PNK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 85GLY 365
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 8PNK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
99 107Right-handed alpha
Helix 2
AA2
A
150 160Right-handed alpha
Helix 3
AA3
A
168 178Right-handed alpha
Helix 4
AA4
A
187 190Right-handed 310
Helix 5
AA5
A
191 208Right-handed alpha
Helix 6
AA6
A
234 249Right-handed alpha
Helix 7
AA7
A
264 274Right-handed alpha
Helix 8
AA8
A
282 292Right-handed alpha
Helix 9
AA9
A
307 314Right-handed alpha
Helix 10
AB1
A
316 326Right-handed alpha
Helix 11
AB2
A
345 356Right-handed alpha
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There are 2 sheets in PDB entry 8PNK. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
87 89first strand
Strand 2
A
92 94anti-parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
130 133first strand
Strand 2
A
360 364anti-parallel
Strand 3
A
182 185parallel
Strand 4
A
336 340parallel
Strand 5
A
302 305parallel
Strand 6
A
228 231parallel
Strand 7
A
278 281parallel
Strand 8
A
256 259parallel
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