Analysis of interatomic Contacts of Structural Units in PDB entry:
8PNS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8PNS entry

There are 2 chains in PDB entry 8PNS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 2TYR 601
B
 ASP 3TYR 601
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 60 helices in PDB entry 8PNS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
7 17Right-handed alpha
Helix 2
AA2
A
20 27Right-handed alpha
Helix 3
AA3
A
35 53Right-handed alpha
Helix 4
AA4
A
54 56Right-handed 310
Helix 5
AA5
A
57 65Right-handed alpha
Helix 6
AA6
A
78 89Right-handed alpha
Helix 7
AA7
A
90 94Right-handed 310
Helix 8
AA8
A
97 101Right-handed 310
Helix 9
AA9
A
106 142Right-handed alpha
Helix 10
AB1
A
143 157Right-handed alpha
Helix 11
AB2
A
173 177Right-handed 310
Helix 12
AB3
A
222 227Right-handed 310
Helix 13
AB4
A
283 321Right-handed alpha
Helix 14
AB5
A
339 342Right-handed 310
Helix 15
AB6
A
343 377Right-handed alpha
Helix 16
AB7
A
379 416Right-handed alpha
Helix 17
AB8
A
417 425Right-handed 310
Helix 18
AB9
A
426 436Right-handed alpha
Helix 19
AC1
A
437 439Right-handed 310
Helix 20
AC2
A
443 455Right-handed alpha
Helix 21
AC3
A
456 460Right-handed 310
Helix 22
AC4
A
461 478Right-handed alpha
Helix 23
AC5
A
481 483Right-handed 310
Helix 24
AC6
A
484 512Right-handed alpha
Helix 25
AC7
A
513 549Right-handed alpha
Helix 26
AC8
A
553 571Right-handed alpha
Helix 27
AC9
A
574 584Right-handed alpha
Helix 28
AD1
A
586 591Right-handed alpha
Helix 29
AD2
A
593 597Right-handed 310
Helix 30
AD3
B
7 17Right-handed alpha
Helix 31
AD4
B
20 27Right-handed alpha
Helix 32
AD5
B
35 53Right-handed alpha
Helix 33
AD6
B
54 56Right-handed 310
Helix 34
AD7
B
57 65Right-handed alpha
Helix 35
AD8
B
78 89Right-handed alpha
Helix 36
AD9
B
90 94Right-handed 310
Helix 37
AE1
B
97 101Right-handed 310
Helix 38
AE2
B
106 121Right-handed alpha
Helix 39
AE3
B
121 142Right-handed alpha
Helix 40
AE4
B
143 150Right-handed alpha
Helix 41
AE5
B
150 156Right-handed alpha
Helix 42
AE6
B
173 177Right-handed 310
Helix 43
AE7
B
222 227Right-handed 310
Helix 44
AE8
B
283 321Right-handed alpha
Helix 45
AE9
B
339 342Right-handed 310
Helix 46
AF1
B
343 377Right-handed alpha
Helix 47
AF2
B
379 416Right-handed alpha
Helix 48
AF3
B
417 425Right-handed 310
Helix 49
AF4
B
426 436Right-handed alpha
Helix 50
AF5
B
437 439Right-handed 310
Helix 51
AF6
B
443 454Right-handed alpha
Helix 52
AF7
B
456 460Right-handed 310
Helix 53
AF8
B
461 478Right-handed alpha
Helix 54
AF9
B
481 483Right-handed 310
Helix 55
AG1
B
484 512Right-handed alpha
Helix 56
AG2
B
513 549Right-handed alpha
Helix 57
AG3
B
553 571Right-handed alpha
Helix 58
AG4
B
574 584Right-handed alpha
Helix 59
AG5
B
586 591Right-handed alpha
Helix 60
AG6
B
593 597Right-handed 310
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There are 8 sheets in PDB entry 8PNS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
67 69first strand
Strand 2
A
72 74anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
159 164first strand
Strand 2
A
208 215parallel
Strand 3
A
228 233anti-parallel
Strand 4
A
265 278anti-parallel
Strand 5
A
189 199anti-parallel
Strand 6
A
180 183anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
159 164first strand
Strand 2
A
208 215parallel
Strand 3
A
228 233anti-parallel
Strand 4
A
265 278anti-parallel
Strand 5
A
249 254anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
235 237first strand
Strand 2
A
243 246anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
67 69first strand
Strand 2
B
72 74anti-parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
159 164first strand
Strand 2
B
208 215parallel
Strand 3
B
228 233anti-parallel
Strand 4
B
265 278anti-parallel
Strand 5
B
189 199anti-parallel
Strand 6
B
180 183anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
159 164first strand
Strand 2
B
208 215parallel
Strand 3
B
228 233anti-parallel
Strand 4
B
265 278anti-parallel
Strand 5
B
249 254anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
235 237first strand
Strand 2
B
243 246anti-parallel
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